Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4065g00055 ATGGAACTCTACAACCGGAGACTGCTTCTACTGAACGAAGATGAGCCTTCCTTCTCCGACGCCTCTTCACCACCTCGGTTAACGGCCGCACCCCTGTCGTCTTCACTGTTCGTAACACCTCTGAAACTATCAGCGCCTGTACCCTTCAATTCTGACGTTGCTTACATCGTCATCATCGTCCTGCTCTTAGTAGCTTTCATCTTTCTGTTCATCCGAAGGTTCGCCGACCACTCCCCCGCATCCGCCCAGCACTCGCCACCGGCGTCTTCTTATTACCATTCTCCGTCATCCTCGTGCGGTGGTCTCGACCGTGCCACCGTCCAATCCCTGCCGGTGTTTCGGTACAACGCAGAAGGAAAGCACCAGGAGGACTGCACCATTTGCCTTAGCGAATTCGAGACCGGTGAGACCGTTAAGGTGATCCCGAACTGTAAGCACGTGTTCCACCGGGAGTGCGTCGACACGTGGCTATCCTCGCACGTGACGTGCCCGATTTGCCGGGGCAGCAAATTTATTGCGGTGGAACGGCAGGCAGAGTCGGCTAAGGTGGAGCCGACTAGCGATCAGATTGTCAGACGCGAGCCGGTAGCGTCAACGGTCGAGAATGGTGTAACGTGGCGAGAAGGTACAGCGAGGGGAACGTGTAACCAGAGACGAAGCCGTAGTTGCTCAAGCTTTAGAGACGCCGCAGTTTTGCGAAGAACATTAAGCTACTAG 717 0.5537 MELYNRRLLLLNEDEPSFSDASSPPRLTAAPLSSSLFVTPLKLSAPVPFNSDVAYIVIIVLLLVAFIFLFIRRFADHSPASAQHSPPASSYYHSPSSSCGGLDRATVQSLPVFRYNAEGKHQEDCTICLSEFETGETVKVIPNCKHVFHRECVDTWLSSHVTCPICRGSKFIAVERQAESAKVEPTSDQIVRREPVASTVENGVTWREGTARGTCNQRRSRSCSSFRDAAVLRRTLSY 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4065g00055 238 CDD RING-H2_EL5-like 124 167 - -
Pral4065g00055 238 Pfam Ring finger domain 124 167 IPR001841 -
Pral4065g00055 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 39 169 - -
Pral4065g00055 238 FunFam E3 ubiquitin-protein ligase ATL6 91 171 - -
Pral4065g00055 238 SMART ring_2 125 166 IPR001841 -
Pral4065g00055 238 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Pral4065g00055 238 SUPERFAMILY RING/U-box 106 173 - -
Pral4065g00055 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 171 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4065g00055 Pral-Chr4065 256310 257226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4065g00055 55 237 C3H Transcription Factor Family AT2G27940 37.879 4.14e-33 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4065g00055 - K10664 pcin:129313653 338.191