LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4065g00054	ATGGCTATTGTTGGTGTGCACAATGTGTCAGTGCTTGACTCTTCTTTCCTTAGGGACTCCCATTCTCAATCATCGAGTAGACGTGGAGGTGGAGGCAGGAGAAGCACCCAGTCATCTTCACTTTTGCAACTATGGCAAGAGATTGAGGATGAGCATATGGTGAGTCGTCAAGCTCAAGCAAGACCTGGGGAATTATTGCTTCAAGGATCTCATGGTAGGCAAGAGGAGTTAAACAATTCTAGCTGTGAGAACTCTTCTGATCTTGGAGATCTTGAAAGGGAAAGAGTAAGGAAAATTTTTAGAGAATGGATGAAGAGTGGCGCTAGAGATGAAGCGTCCAGCATTTCCATCAGAAACAACAGTCCTAGGGACGAGTGGCTTGGCGAAACAGAGCAGGAGAGAGTGAGAATCATAAGGGAGTGGGTACAAATGAGTAGCCAGCAGCAGAGCGGTATTTCTTCTGGGGAAAATAGAGAGGAGCAATCTGCAGAAATTGAACGTGTTCGTAATGGATTTGTTAGAAACAAAAATGAAGGCCAGAGTGAGCAAACTCGCAGGGGGATTCGAAAACTATGTGGCAGACAGGTTTTGCTTGATATGCTAAACAAGGCTGAGAGAGAAAGGCAGAGAGAAGTTCAGGAGTTGTTAGACCAACGGGCAGTATCTCATTTTCCTCATCGCAATCGCATTCAGGCATTGCTAAGAGGCAGGTTTCTGAGAAATGATAGGGTTGCTGATAAGAAAAGGACCGCTTCTGTGTCGGACAGTGAATTAGGTTTATTGAGGCAAAAGCAGACTGTATCAGGTTTAAGGGAAGGATTTTTCTCTAGAAAGAACATTTCTGGTTGCAGTTTAGAAAGCAACAATGTACCTGATACCTCATCAAGCAGTGATATGGATGATGCCAGCAGTTCACAACGCTCCCCAAATGTACAGCCCAAACTATCTGAGTTCAATTATCGGGGAACTGATGGAACTCAGATATCAGGTAACGAGGTTTGTCTGCAGGACTCTCCAGCTCATGTTGAAGCAGAAGAACCAAAGGATTTGAAAATTGAATCAAGAGATTTACAGTCATCAATCAATGTTGCGATCGAAAGAATAGATGACACTCCACAAAGTGTTCATGTGGGGTCAACCGAAGACACGTCTAAGGAACTTTCCCAACCACGCTTGCCAGTTGAAGATACAGAGCATTGCTCTGCGCAGGTATTCAGCGAGGACCATAACGAACAGTCTGATCATGGATATTATTCAGAGGGAAATATCATTGATGACGATAACGTGAATGAGCCAGTTGCTCTGGAAGGAGAGCTGCCCATAGATTTTGGAAATGATCGAAGTGATAGTCTTCCACTTGATGTTGAACAGAGAGACAACCCTGAGGGAAGTATGGATCTTGATCATCCAACTTCTCCAGCAAACGACAGGTCCCAACATATGTTGGACTACGAAGATGGCGAAGACCCTCATGTTCAAGAAGCATCTGAATTGCGGTCACAAGATGATGGCGCTCAAGAACCGATTATTGAAAATTTTTCGGGAGGATCTTCTGATCATGAAGGTGCTGCTACAGTTAGCGGAACTCACGTGATTTATTTTTCTGATGATGACAGTGCTTATAGCGGAGAACTCAGTGAACTGTTAAATAGGAGACGTGTTTCTAATCTCCTTAGCGGCGGTTTTCGGGAGAATCTGGAGCAATTGGTACGATCATACGTTGAAAGGCAGAACCATGCCCAATTAGAGTGGGAGCTGCAAGAGGAAGGAGAAGGAGACGACCTGGAGCAGCATGCTATGGATCAGACTGGGGGCCAAGATGGTCCTTATGACAGTTCAATTTACTTGCCCTCATCACCACTTCAATCTTCTCGACCTCTTTGGGACCAACAGAATGAAATGAACAGTCAACACACTGGAATTGAGTGGGAGATTATTAATGGTTTGAGGATTGACATGGCTGTGCTGCAGCAGAGGATGAATGAAATGCAGAGAATGCTGGAGGCCTGCATGGATATGCAGCTTGAGCTCCAACGCTCATTGAAGCAAGAAGTTTCTGCAGCATTGCTTAATTGTTCAGATGATGGGTCAACGAGATTGCAAGACCCTGATTCCCAAGATGATAACTCTAAGTGGGAGTGTGTGAGGAAAGGAGTCTGCTGCATATGTTGTAAAAGCAATATTGATTCTTTACTGTACAGATGTGGGCACATGTGTATGTGTTCAAAGTGTGCGAATGAATTGTTGGAGAGCAAGAAAAAGTGCCCAATGTGCGAAGCACCTGTGGTGGAGGTCATACATGCTTATTCCATACTTTAA	2319	0.445	MAIVGVHNVSVLDSSFLRDSHSQSSSRRGGGGRRSTQSSSLLQLWQEIEDEHMVSRQAQARPGELLLQGSHGRQEELNNSSCENSSDLGDLERERVRKIFREWMKSGARDEASSISIRNNSPRDEWLGETEQERVRIIREWVQMSSQQQSGISSGENREEQSAEIERVRNGFVRNKNEGQSEQTRRGIRKLCGRQVLLDMLNKAERERQREVQELLDQRAVSHFPHRNRIQALLRGRFLRNDRVADKKRTASVSDSELGLLRQKQTVSGLREGFFSRKNISGCSLESNNVPDTSSSSDMDDASSSQRSPNVQPKLSEFNYRGTDGTQISGNEVCLQDSPAHVEAEEPKDLKIESRDLQSSINVAIERIDDTPQSVHVGSTEDTSKELSQPRLPVEDTEHCSAQVFSEDHNEQSDHGYYSEGNIIDDDNVNEPVALEGELPIDFGNDRSDSLPLDVEQRDNPEGSMDLDHPTSPANDRSQHMLDYEDGEDPHVQEASELRSQDDGAQEPIIENFSGGSSDHEGAATVSGTHVIYFSDDDSAYSGELSELLNRRRVSNLLSGGFRENLEQLVRSYVERQNHAQLEWELQEEGEGDDLEQHAMDQTGGQDGPYDSSIYLPSSPLQSSRPLWDQQNEMNSQHTGIEWEIINGLRIDMAVLQQRMNEMQRMLEACMDMQLELQRSLKQEVSAALLNCSDDGSTRLQDPDSQDDNSKWECVRKGVCCICCKSNIDSLLYRCGHMCMCSKCANELLESKKKCPMCEAPVVEVIHAYSIL	772

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4065g00054	772	Pfam	Zinc finger, C3HC4 type (RING finger)	718	764	-	-
	Pral4065g00054	772	MobiDBLite	consensus disorder prediction	159	186	-	-
	Pral4065g00054	772	MobiDBLite	consensus disorder prediction	285	318	-	-
	Pral4065g00054	772	MobiDBLite	consensus disorder prediction	439	522	-	-
	Pral4065g00054	772	Coils	Coil	194	221	-	-
	Pral4065g00054	772	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	696	770	IPR013083	-
	Pral4065g00054	772	MobiDBLite	consensus disorder prediction	17	40	-	-
	Pral4065g00054	772	MobiDBLite	consensus disorder prediction	449	465	-	-
	Pral4065g00054	772	ProSiteProfiles	Zinc finger RING-type profile.	720	759	IPR001841	-
	Pral4065g00054	772	MobiDBLite	consensus disorder prediction	373	387	-	-
	Pral4065g00054	772	MobiDBLite	consensus disorder prediction	373	392	-	-
	Pral4065g00054	772	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	1	772	-	-
	Pral4065g00054	772	MobiDBLite	consensus disorder prediction	406	427	-	-
	Pral4065g00054	772	CDD	mRING-HC-C3HC5_NEU1	720	769	-	-
	Pral4065g00054	772	SUPERFAMILY	RING/U-box	719	765	-	-
	Pral4065g00054	772	Coils	Coil	646	673	-	-
	Pral4065g00054	772	MobiDBLite	consensus disorder prediction	591	616	-	-
	Pral4065g00054	772	MobiDBLite	consensus disorder prediction	146	186	-	-
	Pral4065g00054	772	MobiDBLite	consensus disorder prediction	479	501	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4065g00054	Pral-Chr4065	252229	256308	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4065g00054	720	766	C3H Transcription Factor Family	AT3G06140	42.553	6.31e-07	50.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4065g00054	-		-	gmx:100801329	766.148