Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4065g00053 ATGGTGAGTCGTCAAGCTCAAGCAAGACCTGGGGAATTATTGCTTCAAGGATCTCATGGTAGGCAAGAGGAGTTAAACAATTCTAGCTGTGAGAACTCTTCTGATCTTGGAGATCTTGAAAGGGAAAGAGTAAGGAAAATTTTTAGAGAATGGATGAAGAGTGGCGCTAGAGATGAAGCGTCCAGCATTTCCATCAGAAACAACAGTCCTAGGGACGAGTGGCTTGGCGAAACAGAGCAGGAGAGAGTGAGAATCATAAGGGAGTGGGTACAAATGAGTAGCCAGCAGCAGAGCGGTATTTCTTCTGGGGAAAATAGAGAGGAGCAATCTGCAGAAATTGAACGTGTTCGTAATGGATTTGTTAGAAACAAAAATGAAGGCCAGAGTGAGCAAACTCGCAGGGGGATTCGAAAACTATGTGGCAGACAGGTTTTGCTTGATATGCTAAACAAGGCTGAGAGAGAAAGGCAGAGAGAAGTTCAGGAGTTGTTAGACCAACGGGCAGTATCTCATTTTCCTCATCGCAATCGCATTCAGGCATTGCTAAGAGGCAGGTTTCTGAGAAATGATAGGGTTGCTGATAAGAAAAGGACCGCTTCTGTGTCGGACAGTGAATTAGGTTTATTGAGGCAAAAGCAGACTGTATCAGGTTTAAGGGAAGGATTTTTCTCTAGAAAGAACATTTCTGGTTGCAGTTTAGAAAGCAACAATGTACCTGATACCTCATCAAGCAGTGATATGGATGATGCCAGCAGTTCACAACGCTCCCCAAATGTACAGCCCAAACTATCTGAGTTCAATTATCGGGGAACTGATGGAACTCAGATATCAGGTAACGAGGTTTGTCTGCAGGACTCTCCAGCTCATGTTGAAGCAGAAGAACCAAAGGATTTGAAAATTGAATCAAGAGATTTACAGTCATCAATCAATGTTGCGATCGAAAGAATAGATGACACTCCACAAAGTGTTCATGTGGGGTCAACCGAAGACACGTCTAAGGAACTTTCCCAACCACGCTTGCCAGTTGAAGATACAGAGCATTGCTCTGCGCAGGTATTCAGCGAGGACCATAACGAACAGTCTGATCATGGATATTATTCAGAGGGAAATATCATTGATGACGATAACGTGAATGAGCCAGTTGCTCTGGAAGGAGAGCTGCCCATAGATTTTGGAAATGATCGAAGTGATAGTCTTCCACTTGATGTTGAACAGAGAGACAACCCTGAGGGAAGTATGGATCTTGATCATCCAACTTCTCCAGCAAACGACAGGTCCCAACATATGTTGGACTACGAAGATGGCGAAGACCCTCATGTTCAAGAAGCATCTGAATTGCGGTCACAAGATGATGGCGCTCAAGAACCGATTATTGAAAATTTTTCGGGAGGATCTTCTGATCATGAAGGTGCTGCTACAGTTAGCGGAACTCACGTGATTTATTTTTCTGATGATGACAGTGCTTATAGCGGAGAACTCAGTGAACTGTTAAATAGGAGACGTGTTTCTAATCTCCTTAGCGGCGGTTTTCGGGAGAATCTGGAGCAATTGGTACGATCATACGTTGAAAGGCAGAACCATGCCCAATTAGAGTGGGAGCTGCAAGAGGAAGGAGAAGGAGACGACCTGGAGCAGCATGCTATGGATCAGACTGGGGGCCAAGATGGTCCTTATGACAGTTCAATTTACTTGCCCTCATCACCACTTCAATCTTCTCGACCTCTTTGGGACCAACAGAATGAAATGAACAGTCAACACACTGGAATTGAGTGGGAGATTATTAATGGTTTGAGGATTGACATGGCTGTGCTGCAGCAGAGGATGAATGAAATGCAGAGAATGCTGGAGGCCTGCATGGATATGCAGCTTGAGCTCCAACGCTCATTGAAGCAAGAAGTTTCTGCAGCATTGCTTAATTGTTCAGATGATGGGTCAACGAGATTGCAAGACCCTGATTCCCAAGATGATAACTCTAAGTGGGAGTGTGTGAGGAAAGGAGTCTGCTGCATATGTTGTAAAAGCAATATTGATTCTTTACTGTACAGATGTGGGCACATGTGTATGTGTTCAAAGTGTGCGAATGAATTGTTGGAGAGCAAGAAAAAGTGCCCAATGTGCGAAGCACCTGTGGTGGAGGTCATACATGCTTATTCCATACTTTAA 2163 0.4429 MVSRQAQARPGELLLQGSHGRQEELNNSSCENSSDLGDLERERVRKIFREWMKSGARDEASSISIRNNSPRDEWLGETEQERVRIIREWVQMSSQQQSGISSGENREEQSAEIERVRNGFVRNKNEGQSEQTRRGIRKLCGRQVLLDMLNKAERERQREVQELLDQRAVSHFPHRNRIQALLRGRFLRNDRVADKKRTASVSDSELGLLRQKQTVSGLREGFFSRKNISGCSLESNNVPDTSSSSDMDDASSSQRSPNVQPKLSEFNYRGTDGTQISGNEVCLQDSPAHVEAEEPKDLKIESRDLQSSINVAIERIDDTPQSVHVGSTEDTSKELSQPRLPVEDTEHCSAQVFSEDHNEQSDHGYYSEGNIIDDDNVNEPVALEGELPIDFGNDRSDSLPLDVEQRDNPEGSMDLDHPTSPANDRSQHMLDYEDGEDPHVQEASELRSQDDGAQEPIIENFSGGSSDHEGAATVSGTHVIYFSDDDSAYSGELSELLNRRRVSNLLSGGFRENLEQLVRSYVERQNHAQLEWELQEEGEGDDLEQHAMDQTGGQDGPYDSSIYLPSSPLQSSRPLWDQQNEMNSQHTGIEWEIINGLRIDMAVLQQRMNEMQRMLEACMDMQLELQRSLKQEVSAALLNCSDDGSTRLQDPDSQDDNSKWECVRKGVCCICCKSNIDSLLYRCGHMCMCSKCANELLESKKKCPMCEAPVVEVIHAYSIL 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4065g00053 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 718 IPR013083 -
Pral4065g00053 720 MobiDBLite consensus disorder prediction 1 37 - -
Pral4065g00053 720 MobiDBLite consensus disorder prediction 387 470 - -
Pral4065g00053 720 ProSiteProfiles Zinc finger RING-type profile. 668 707 IPR001841 -
Pral4065g00053 720 MobiDBLite consensus disorder prediction 233 266 - -
Pral4065g00053 720 MobiDBLite consensus disorder prediction 107 134 - -
Pral4065g00053 720 MobiDBLite consensus disorder prediction 321 335 - -
Pral4065g00053 720 MobiDBLite consensus disorder prediction 94 134 - -
Pral4065g00053 720 MobiDBLite consensus disorder prediction 321 340 - -
Pral4065g00053 720 MobiDBLite consensus disorder prediction 397 413 - -
Pral4065g00053 720 Coils Coil 142 169 - -
Pral4065g00053 720 SUPERFAMILY RING/U-box 667 713 - -
Pral4065g00053 720 MobiDBLite consensus disorder prediction 539 564 - -
Pral4065g00053 720 Pfam Zinc finger, C3HC4 type (RING finger) 666 712 - -
Pral4065g00053 720 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 720 - -
Pral4065g00053 720 Coils Coil 594 621 - -
Pral4065g00053 720 MobiDBLite consensus disorder prediction 20 34 - -
Pral4065g00053 720 MobiDBLite consensus disorder prediction 427 449 - -
Pral4065g00053 720 MobiDBLite consensus disorder prediction 354 375 - -
Pral4065g00053 720 CDD mRING-HC-C3HC5_NEU1 668 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4065g00053 Pral-Chr4065 252012 256308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4065g00053 668 714 C3H Transcription Factor Family AT3G06140 42.553 6.75e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4065g00053 - - gmx:100804184 716.457