Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4065g00049 ATGGCGAACGGTAAGGATTCCGACGAGTTCCTGGTGTTATCGAGGGTCCGGACGGGGCTGAAGAGGGAGTTCGCATTCGCTATGAAGGCTCAATCCGAGATCTGTGGATCTCTTGGACGGACCCGTGCCAGCAAAAACAAGAATGGGGTTCAAGATAGTCCCAGCAACAAGAGGTCCAAGAAATCTGGTTCGTCTAGGGCTAAGAGAGATGAACAGAATGGTGCGAAGCCGGTGCCGGAGGATGTTGTTGAACCCATTGTGTTGGAAGATGTCAAGGGAAAGGAGGTAAAGGCTGTAGAGGATATGGAGGATGTCATGAGCGAGGAGGAGGCAAAAAGCGATGTGGTGGATCTATCGGGTGACGACGAACCCAAGAACCTGGTGGGTGAGCCGACGGGCAAGAGGGAACCCATGGGTGAGGCTTCAGTGCCCATCTGTGATGAAGAGCCCAAGGGCGATGATGTAGAAACCGTAAGCGACGATGAGCCGAAAAGTACTCCAGTGTCAGAACCACTGAAGGAAGTAACAATGGATGATATAGTGCAACCCATTTGTCAACCCGAGCCCAAGGAACATCAAACGAATGAAGACGATTTACAGAAGTCTTTAACGACTGAGAACTTAAGCGGGGGAGAGTCATGTTCTCCAGAAGAAAAGGAGGTCATTGTGACTGCTCCTGTTACGCTTAATGATGACAATAGGGTGAAGGCAATGATAGGGGGGCCAACGAGGCGGTTTACGCGGTCGGCTCTGAGACAACAGCAAGATGATTCGAAGCTCTACAATGATGGGAAAGAAGCTTGTGATAGAGCCATTAGATTTGGTGATGTTAAGATGGAAAGTGAGGATGCTTCATTAATCACTACGCCAACTCAAACAAAAATGTCGAAGAATAGTGCCTCGAAGAAGTTCCCGACGAAGCTAAAGGACCTACTAGCTACGGGGATCCTTGAAGGACTACCAGTAAAATATGTTCGGGGAGTGAAGGCACGAAGGCCTGGAGATACAGGGCTCCGAGGAGAGATTAGAGGCTCAGGGATTTTGTGCTATTGCGAAGTTTGTAACGGGGTTGAGGTTGTAACACCCACGGTGTTTGAGCTGCATGCTGGTAGTGCAAACAAACGCCCCCCTGAGTACATATACCTTGAGAATGGGAATACGCTCCGTGATGTCATGAATACATGTTCGAGCGTTGCAAGGGATGTTTTGGAGGAATCAGTGCAGAAAATCCTTGGGGGCTTCAGCTTTAAGAAATCTGCAACCTGTTTGAAGTGCAGAGCGGCCATATCTCAAGATGGCAAGGGATGCTCAAGACTCCTTTGCGATAGATGCGTGGTCCTAAAGGAGCCTCAACCTAGCCCTATTCAAGTAACTGAGGCTAGCAATTCCTGTTCTTCACCTGCGGTTACTCTCAGGTCTCCAGAACCGGTTGCTGTTCCTTCGACGTTAAACAGTGGGATGAAGCACACAGCTTCTCGAGGCAAGAGTCAGGGAAGAATAACTAGGAAGGATTTGCGGTTGCACAAATTGGTTTTTGAGGAAGATGTGTTGCCAGATGGGACTGAAGTTGCCTACTATGCTCGTGGACAGAAACTGTTGGTGGGCTACAAAAAGGGGTTTGGAATTGTTTGTAGTTGCTGTGACTCTGAGGTAAGCCCCTCACAATTTGAAGCTCATGCTGGCTGGGCATCGCGACGCAAGCCTTATCTGCACATATACACATCCAATGGAGTCTCTCTCCACGAATTGTCCCTTTCTCTATCAAAAGGCCGGAGGTTTTCCACCAATGAAAATGATGACCTCTGCAGCATCTGCTCAGATGGAGGGAGTCTTCTGTGTTGTGACGGATGCCCAAGGGCTTTTCACATAGACTGTGTTCCTCTGCCATACATTCCGACTGGCACTTGGTATTGTAAATATTGCCAGAACCTGTTCCAGAAGGACAGATATGTGGAGCATAACATGAATGCATTGGCAGCAGGAAGGATTGCGGGGGTTGATCCTTTAGAACAGATAAACCAAAGATGCATTCGCATTGTCAAAACTGTAGAGGTTGACCATGGTGGATGTGCATTATGCAGAAGCCATGATTTCAGCAAAAACTTTGGTCCTCGAACAGTGATTATATGTGATCAGTGTGAAAGGGAATATCATGTAGGCTGTTTGAAGGAGCATAACATGCAGAACTTAGAGGAATTGCCTGAAGGAAATTGGTTCTGCTGCACTGATTGCAGTCGGATTCATTCTGCTCTGCTTAATCTGGTCTCTTGTGGGGCAGAGAATCTTCCGGATTCTCTATTAAGTATGATACAAAAGAAGCATGAAGAAAAGGGCCTGGAAAATGGGGATGGTCTAGATATAAAATGGAGAATCTTAAACTGGAAACTGGCTGCTTCTGATGAAACTAGGCAACTGCTTTCGAAGGCTGTTGCAATTTTCCATGAGCGGTTTGATCCAATAGTTGATTCGACTTCAGGCCGTGATTTCATTCCAACAATGCTCTATGGGAGGAACATCAGGGGTCAGGATTTTGGTGGGATGTATTGTGCAGTGCTAACAGTGAATAAAGTGGTTGTTTCTGCTGGCATATTTCGTATATTTGGGGCAGAGGTGGCAGAGCTTCCCTTAGTGGCAACAATTGCAGATTGCCAAGGACAGGGTTACTTCCAGTCTTTGTTTTCGTGCATTGAAAGGCTGCTGGGATCTTTGAATGTGAAACAGTTCGTCCTACCAGCTGCTGAAGAAGCGGAATCTATATGGACGAGTAAATTCGGTTTTACGAAGCTAGAACAAGATGAGGTAAACATTTACAAGAGATATTATCACATGATGATATTTCAAGGGACCTCAGTGCTGAGGAAGTCAGTTCCGGCACCACCCGAATTGTGTGCCAATGCGGTGTAA 2904 0.4711 MANGKDSDEFLVLSRVRTGLKREFAFAMKAQSEICGSLGRTRASKNKNGVQDSPSNKRSKKSGSSRAKRDEQNGAKPVPEDVVEPIVLEDVKGKEVKAVEDMEDVMSEEEAKSDVVDLSGDDEPKNLVGEPTGKREPMGEASVPICDEEPKGDDVETVSDDEPKSTPVSEPLKEVTMDDIVQPICQPEPKEHQTNEDDLQKSLTTENLSGGESCSPEEKEVIVTAPVTLNDDNRVKAMIGGPTRRFTRSALRQQQDDSKLYNDGKEACDRAIRFGDVKMESEDASLITTPTQTKMSKNSASKKFPTKLKDLLATGILEGLPVKYVRGVKARRPGDTGLRGEIRGSGILCYCEVCNGVEVVTPTVFELHAGSANKRPPEYIYLENGNTLRDVMNTCSSVARDVLEESVQKILGGFSFKKSATCLKCRAAISQDGKGCSRLLCDRCVVLKEPQPSPIQVTEASNSCSSPAVTLRSPEPVAVPSTLNSGMKHTASRGKSQGRITRKDLRLHKLVFEEDVLPDGTEVAYYARGQKLLVGYKKGFGIVCSCCDSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSLSLSKGRRFSTNENDDLCSICSDGGSLLCCDGCPRAFHIDCVPLPYIPTGTWYCKYCQNLFQKDRYVEHNMNALAAGRIAGVDPLEQINQRCIRIVKTVEVDHGGCALCRSHDFSKNFGPRTVIICDQCEREYHVGCLKEHNMQNLEELPEGNWFCCTDCSRIHSALLNLVSCGAENLPDSLLSMIQKKHEEKGLENGDGLDIKWRILNWKLAASDETRQLLSKAVAIFHERFDPIVDSTSGRDFIPTMLYGRNIRGQDFGGMYCAVLTVNKVVVSAGIFRIFGAEVAELPLVATIADCQGQGYFQSLFSCIERLLGSLNVKQFVLPAAEEAESIWTSKFGFTKLEQDEVNIYKRYYHMMIFQGTSVLRKSVPAPPELCANAV 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4065g00049 967 MobiDBLite consensus disorder prediction 109 130 - -
Pral4065g00049 967 ProSitePatterns Zinc finger PHD-type signature. 602 641 IPR019786 -
Pral4065g00049 967 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 796 959 IPR000182 GO:0016747
Pral4065g00049 967 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 588 666 IPR013083 -
Pral4065g00049 967 SMART PHD_3 689 745 IPR001965 -
Pral4065g00049 967 SMART PHD_3 601 642 IPR001965 -
Pral4065g00049 967 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 686 747 - -
Pral4065g00049 967 MobiDBLite consensus disorder prediction 146 168 - -
Pral4065g00049 967 SUPERFAMILY FYVE/PHD zinc finger 588 643 IPR011011 -
Pral4065g00049 967 MobiDBLite consensus disorder prediction 477 498 - -
Pral4065g00049 967 Pfam Tify domain binding domain 340 395 IPR032308 -
Pral4065g00049 967 Pfam Tify domain binding domain 535 583 IPR032308 -
Pral4065g00049 967 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 845 946 IPR016181 -
Pral4065g00049 967 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 684 747 IPR013083 -
Pral4065g00049 967 FunFam PHD finger family protein 786 955 - -
Pral4065g00049 967 Pfam PHD-finger 602 643 IPR019787 -
Pral4065g00049 967 MobiDBLite consensus disorder prediction 36 86 - -
Pral4065g00049 967 SUPERFAMILY FYVE/PHD zinc finger 681 746 IPR011011 -
Pral4065g00049 967 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 588 665 - -
Pral4065g00049 967 ProSiteProfiles Zinc finger PHD-type profile. 599 644 IPR019787 -
Pral4065g00049 967 MobiDBLite consensus disorder prediction 37 60 - -
Pral4065g00049 967 MobiDBLite consensus disorder prediction 101 178 - -
Pral4065g00049 967 MobiDBLite consensus disorder prediction 477 494 - -
Pral4065g00049 967 PANTHER AUTOIMMUNE REGULATOR 72 955 - -
Pral4065g00049 967 Gene3D - 786 953 - -
Pral4065g00049 967 CDD PHD1_AIRE 601 641 - -
Pral4065g00049 967 MobiDBLite consensus disorder prediction 64 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4065g00049 Pral-Chr4065 231635 237735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4065g00049 305 956 PHD Transcription Factor Family AT2G36720 46.862 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4065g00049 TDBD 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4065g00049 - - pcin:129313514 1733