Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4065g00048 ATGGCGAACGGTAAGGATTCCGACGAGTTCCTGGTGTTATCGAGGGTCCGGACGGGGCTGAAGAGGGAGTTCGCATTCGCTATGAAGGCTCAATCCGAGATCTGTGGATCTCTTGGACGGACCCGTGCCAGCAAAAACAAGAATGGGGTTCAAGATAGTCCCAGCAACAAGAGGTCCAAGAAATCTGGTTCGTCTAGGGCTAAGAGAGATGAACAGAATGGTGCGAAGCCGGTGCCGGAGGATGTTGTTGAACCCATTGTGTTGGAAGATGTCAAGGGAAAGGAGGTAAAGGCTGTAGAGGATATGGAGGATGTCATGAGCGAGGAGGAGGCAAAAAGCGATGTGGTGGATCTATCGGGTGACGACGAACCCAAGAACCTGGTGGGTGAGCCGACGGGCAAGAGGGAACCCATGGGTGAGGCTTCAGTGCCCATCTGTGATGAAGAGCCCAAGGGCGATGATGTAGAAACCGTAAGCGACGATGAGCCGAAAAGTACTCCAGTGTCAGAACCACTGAAGGAAGTAACAATGGATGATATAGTGCAACCCATTTGTCAACCCGAGCCCAAGGAACATCAAACGAATGAAGACGATTTACAGAAGTCTTTAACGACTGAGAACTTAAGCGGGGGAGAGTCATGTTCTCCAGAAGAAAAGGAGGTCATTGTGACTGCTCCTGTTACGCTTAATGATGACAATAGGGTGAAGGCAATGATAGGGGGGCCAACGAGGCGGTTTACGCGGTCGGCTCTGAGACAACAGCAAGATGATTCGAAGCTCTACAATGATGGGAAAGAAGCTTGTGATAGAGCCATTAGATTTGGTGATGTTAAGATGGAAAGTGAGGATGCTTCATTAATCACTACGCCAACTCAAACAAAAATGTCGAAGAATAGTGCCTCGAAGAAGTTCCCGACGAAGCTAAAGGACCTACTAGCTACGGGGATCCTTGAAGGACTACCAGTAAAATATGTTCGGGGAGTGAAGGCACGAAGGCCTGGAGATACAGGGCTCCGAGGAGAGATTAGAGGCTCAGGGATTTTGTGCTATTGCGAAGTTTGTAACGGGGTTGAGGTTGTAACACCCACGGTGTTTGAGCTGCATGCTGGTAGTGCAAACAAACGCCCCCCTGAGTACATATACCTTGAGAATGGGAATACGCTCCGTGATGTCATGAATACATGTTCGAGCGTTGCAAGGGATGTTTTGGAGGAATCAGTGCAGAAAATCCTTGGGGGCTTCAGCTTTAAGAAATCTGCAACCTGTTTGAAGTGCAGAGCGGCCATATCTCAAGATGGCAAGGGATGCTCAAGACTCCTTTGCGATAGATGCGTGGTCCTAAAGGAGCCTCAACCTAGCCCTATTCAAGTAACTGAGGCTAGCAATTCCTGTTCTTCACCTGCGGTTACTCTCAGATATTCCAACTATCCCAGGTCTCCAGAACCGGTTGCTGTTCCTTCGACGTTAAACAGTGGGATGAAGCACACAGCTTCTCGAGGCAAGAGTCAGGGAAGAATAACTAGGAAGGATTTGCGGTTGCACAAATTGGTTTTTGAGGAAGATGTGTTGCCAGATGGGACTGAAGTTGCCTACTATGCTCGTGGACAGAAACTGTTGGTGGGCTACAAAAAGGGGTTTGGAATTGTTTGTAGTTGCTGTGACTCTGAGGTAAGCCCCTCACAATTTGAAGCTCATGCTGGCTGGGCATCGCGACGCAAGCCTTATCTGCACATATACACATCCAATGGAGTCTCTCTCCACGAATTGTCCCTTTCTCTATCAAAAGGCCGGAGGTTTTCCACCAATGAAAATGATGACCTCTGCAGCATCTGCTCAGATGGAGGGAGTCTTCTGTGTTGTGACGGATGCCCAAGGGCTTTTCACATAGACTGTGTTCCTCTGCCATACATTCCGACTGGCACTTGGTATTGTAAATATTGCCAGAACCTGTTCCAGAAGGACAGATATGTGGAGCATAACATGAATGCATTGGCAGCAGGAAGGATTGCGGGGGTTGATCCTTTAGAACAGATAAACCAAAGATGCATTCGCATTGTCAAAACTGTAGAGGTTGACCATGGTGGATGTGCATTATGCAGAAGCCATGATTTCAGCAAAAACTTTGGTCCTCGAACAGTGATTATATGTGATCAGTGTGAAAGGGAATATCATGTAGGCTGTTTGAAGGAGCATAACATGCAGAACTTAGAGGAATTGCCTGAAGGAAATTGGTTCTGCTGCACTGATTGCAGTCGGATTCATTCTGCTCTGCTTAATCTGGTCTCTTGTGGGGCAGAGAATCTTCCGGATTCTCTATTAAGTATGATACAAAAGAAGCATGAAGAAAAGGGCCTGGAAAATGGGGATGGTCTAGATATAAAATGGAGAATCTTAAACTGGAAACTGGCTGCTTCTGATGAAACTAGGCAACTGCTTTCGAAGGCTGTTGCAATTTTCCATGAGCGGTTTGATCCAATAGTTGATTCGACTTCAGGCCGTGATTTCATTCCAACAATGCTCTATGGGAGGAACATCAGGGGTCAGGATTTTGGTGGGATGTATTGTGCAGTGCTAACAGTGAATAAAGTGGTTGTTTCTGCTGGCATATTTCGTATATTTGGGGCAGAGGTGGCAGAGCTTCCCTTAGTGGCAACAATTGCAGATTGCCAAGGACAGTTCGTCCTACCAGCTGCTGAAGAAGCGGAATCTATATGGACGAGTAAATTCGGTTTTACGAAGCTAGAACAAGATGAGGTAAACATTTACAAGAGATATTATCACATGATGATATTTCAAGGGACCTCAGTGCTGAGGAAGTCAGTTCCGGCACCACCCGAATTGTGTGCCAATGCGGTGTAA 2859 0.4715 MANGKDSDEFLVLSRVRTGLKREFAFAMKAQSEICGSLGRTRASKNKNGVQDSPSNKRSKKSGSSRAKRDEQNGAKPVPEDVVEPIVLEDVKGKEVKAVEDMEDVMSEEEAKSDVVDLSGDDEPKNLVGEPTGKREPMGEASVPICDEEPKGDDVETVSDDEPKSTPVSEPLKEVTMDDIVQPICQPEPKEHQTNEDDLQKSLTTENLSGGESCSPEEKEVIVTAPVTLNDDNRVKAMIGGPTRRFTRSALRQQQDDSKLYNDGKEACDRAIRFGDVKMESEDASLITTPTQTKMSKNSASKKFPTKLKDLLATGILEGLPVKYVRGVKARRPGDTGLRGEIRGSGILCYCEVCNGVEVVTPTVFELHAGSANKRPPEYIYLENGNTLRDVMNTCSSVARDVLEESVQKILGGFSFKKSATCLKCRAAISQDGKGCSRLLCDRCVVLKEPQPSPIQVTEASNSCSSPAVTLRYSNYPRSPEPVAVPSTLNSGMKHTASRGKSQGRITRKDLRLHKLVFEEDVLPDGTEVAYYARGQKLLVGYKKGFGIVCSCCDSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSLSLSKGRRFSTNENDDLCSICSDGGSLLCCDGCPRAFHIDCVPLPYIPTGTWYCKYCQNLFQKDRYVEHNMNALAAGRIAGVDPLEQINQRCIRIVKTVEVDHGGCALCRSHDFSKNFGPRTVIICDQCEREYHVGCLKEHNMQNLEELPEGNWFCCTDCSRIHSALLNLVSCGAENLPDSLLSMIQKKHEEKGLENGDGLDIKWRILNWKLAASDETRQLLSKAVAIFHERFDPIVDSTSGRDFIPTMLYGRNIRGQDFGGMYCAVLTVNKVVVSAGIFRIFGAEVAELPLVATIADCQGQFVLPAAEEAESIWTSKFGFTKLEQDEVNIYKRYYHMMIFQGTSVLRKSVPAPPELCANAV 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4065g00048 952 MobiDBLite consensus disorder prediction 109 130 - -
Pral4065g00048 952 MobiDBLite consensus disorder prediction 36 86 - -
Pral4065g00048 952 CDD PHD1_AIRE 607 647 - -
Pral4065g00048 952 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 672 IPR013083 -
Pral4065g00048 952 SMART PHD_3 607 648 IPR001965 -
Pral4065g00048 952 SMART PHD_3 695 751 IPR001965 -
Pral4065g00048 952 MobiDBLite consensus disorder prediction 37 60 - -
Pral4065g00048 952 MobiDBLite consensus disorder prediction 146 168 - -
Pral4065g00048 952 SUPERFAMILY FYVE/PHD zinc finger 594 649 IPR011011 -
Pral4065g00048 952 MobiDBLite consensus disorder prediction 101 178 - -
Pral4065g00048 952 MobiDBLite consensus disorder prediction 485 500 - -
Pral4065g00048 952 SUPERFAMILY FYVE/PHD zinc finger 687 752 IPR011011 -
Pral4065g00048 952 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 753 IPR013083 -
Pral4065g00048 952 Pfam PHD-finger 608 649 IPR019787 -
Pral4065g00048 952 Pfam Tify domain binding domain 541 589 IPR032308 -
Pral4065g00048 952 Pfam Tify domain binding domain 340 395 IPR032308 -
Pral4065g00048 952 ProSitePatterns Zinc finger PHD-type signature. 608 647 IPR019786 -
Pral4065g00048 952 ProSiteProfiles Zinc finger PHD-type profile. 605 650 IPR019787 -
Pral4065g00048 952 MobiDBLite consensus disorder prediction 64 86 - -
Pral4065g00048 952 MobiDBLite consensus disorder prediction 485 504 - -
Pral4065g00048 952 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 594 671 - -
Pral4065g00048 952 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 692 753 - -
Pral4065g00048 952 PANTHER AUTOIMMUNE REGULATOR 72 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4065g00048 Pral-Chr4065 231635 237736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4065g00048 305 941 PHD Transcription Factor Family AT2G36720 45.278 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4065g00048 TDBD 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4065g00048 - - pcin:129313514 1686.77