Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4065g00044 ATGGACATGGATGCCGCAGAGCAGCTTGTGGGGTCGTCCACCTCTCTTAGCGTCGCCAAAGGCAAACGCACCAAACGCCACAGGCCCTTGTCCGCCGCTCTTGCCCACTCCACCTCCTCCTCTGCTTCTGCCGATGATTATACTTCCTTTAATTCCTCCGCCTCCACCACTTTTGACGGCGCCGAAATGATGACGCAAGACATGGCTAATTGTTTGATTCTCTTGGCTCAGAGCGGTGATGCTCCTCATAAGGAGCATCCCGCCACCAAGAACATCAGTGGCTTCTACGTCTACGAGTGCAAAACTTGTAGCAAATCCTTCCCTTCCTTCCAAGCCTTGGGTGGACACAGAGCAAGCCACAAGAAACCTAAGGTTGAGCCCCCGCAACCACTCACCGCCCAAGTCATGAGTTTTGAGTCTGAAGAAGGAGGGGAAGATCAGTTCAAAAGCACTCAGATTTCTCTTCAATTAGCGCCCAACAAGGCTTTCCACAGCAACAAGGCAAAGATTCATGAGTGTTCCATATGTGGGTCGGAGTTTACGTCTGGGCAAGCACTGGGCGGCCATATGAGGAGGCACAGAGCATCGGCCAACACCGCCGCCGTGGAAGTGAAGCCCAGGAGCGTCCTCGAATTAGATCTTAATTTGCCGGCGCCGGAGGACGATCTGCGGGATTCCAAGTTTCAGTTTTCACCCGCGCCGAAATCTCTGGTGCCGTCGGCTCCGGCTCTGGTGGACTGTCATTATTGA 750 0.5387 MDMDAAEQLVGSSTSLSVAKGKRTKRHRPLSAALAHSTSSSASADDYTSFNSSASTTFDGAEMMTQDMANCLILLAQSGDAPHKEHPATKNISGFYVYECKTCSKSFPSFQALGGHRASHKKPKVEPPQPLTAQVMSFESEEGGEDQFKSTLXISLQLAPNKAFHSNKAKIHECSICGSEFTSGQALGGHMRRHRASANTAAVEVKPRSVLELDLNLPAPEDDLRDSKFQFSPAPKSLVPSAPALVDCHY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4065g00044 250 PANTHER ZINC FINGER PROTEIN ZAT5 45 232 - -
Pral4065g00044 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Pral4065g00044 250 SMART c2h2final6 98 120 IPR013087 -
Pral4065g00044 250 SMART c2h2final6 172 194 IPR013087 -
Pral4065g00044 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 199 IPR013087 -
Pral4065g00044 250 MobiDBLite consensus disorder prediction 1 38 - -
Pral4065g00044 250 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Pral4065g00044 250 SUPERFAMILY beta-beta-alpha zinc fingers 97 194 IPR036236 -
Pral4065g00044 250 Gene3D Classic Zinc Finger 95 194 - -
Pral4065g00044 250 Pfam C2H2-type zinc finger 97 123 - -
Pral4065g00044 250 Pfam C2H2-type zinc finger 172 196 - -
Pral4065g00044 250 ProSitePatterns Zinc finger C2H2 type domain signature. 174 194 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4065g00044 Pral-Chr4065 222297 223451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4065g00044 3 250 C2H2 Transcription Factor Family AT2G28200 43.960 2.37e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4065g00044 zf-C2H2_6 1.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4065g00044 - - pcin:129313806 369.777