Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4065g00043 ATGGCTCAATCCTCTCAATTCGGCTGCAAACACTACAGAAGGAGGTGCAAAATCAGAGCGCCCTGTTGCAACGAAATCTTTTACTGTCGCCATTGCCATAATGAAGCTAAGAACTCCGACGACGTCAATCCCGTCCATCGTCACGATGTCCCCCGCCACGACATTATAAAGGTCATCTGTTCTTCATGTGAAACAGAGCAAGATGTTCAACAGTATTGCATCAACTGTGGAATGTGCATGGGGGAGTACTTTTGTGCTGCTTGCAAATTCTTCGACGATGATATTTCGAAGAACCAATACCACTGTGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTCTTCCACTGCAAGAGATGTGGCTGTTGCTACTCCAATGTGATGAAAGAAGGACACCGGTGTGTGGAACGAGCAATGCATCACAATTGCCCTGTTTGTATTGAGTATCTGTTTGATACCTTGAGAGACATCACCGTCTTGCCTTGCGGCCATACTATACATTTGGAGTGTGTTAGAGAGATGGAGAAACATTGCAGGTATTCATGCCCTGTTTGTTCAAAATCCATCTGTGACATGTCAAGCCTGTGGAAGAAGCTTGACCAAGTGATCGCTTCAACGCCAATGCCTGAAGCTTACAAAGACAAGATGGTCTGGATATTGTGCAATGATTGTGGGGTGAACTCTCAAGTGCAGTTTCACGTCGTCGCTCATAAGTGTCAGAGTTGCAATTCATACAACACAAGACAGATACAGGGAAGCCCTACCACTGCATGCACTTCTTCGGTGGCGGAGATGGTGAGATGA 810 0.4605 MAQSSQFGCKHYRRRCKIRAPCCNEIFYCRHCHNEAKNSDDVNPVHRHDVPRHDIIKVICSSCETEQDVQQYCINCGMCMGEYFCAACKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGCCYSNVMKEGHRCVERAMHHNCPVCIEYLFDTLRDITVLPCGHTIHLECVREMEKHCRYSCPVCSKSICDMSSLWKKLDQVIASTPMPEAYKDKMVWILCNDCGVNSQVQFHVVAHKCQSCNSYNTRQIQGSPTTACTSSVAEMVR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4065g00043 269 SUPERFAMILY Zinc hairpin stack 81 138 IPR037275 -
Pral4065g00043 269 SUPERFAMILY CHY zinc finger-like 4 80 IPR037274 GO:0008270
Pral4065g00043 269 ProSiteProfiles Zinc finger RING-type profile. 145 188 IPR001841 -
Pral4065g00043 269 FunFam RING finger and CHY zinc finger domain-containing protein 1 216 259 - -
Pral4065g00043 269 SMART ring_2 145 187 IPR001841 -
Pral4065g00043 269 ProSiteProfiles Zinc finger CTCHY-type profile. 80 144 IPR017921 -
Pral4065g00043 269 Pfam CHY zinc finger 9 90 IPR008913 GO:0008270
Pral4065g00043 269 SUPERFAMILY RING/U-box 143 193 - -
Pral4065g00043 269 ProSiteProfiles Zinc finger CHY-type profile. 2 78 IPR008913 GO:0008270
Pral4065g00043 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 208 IPR013083 -
Pral4065g00043 269 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 5 255 - -
Pral4065g00043 269 Pfam Zinc finger, C3HC4 type (RING finger) 145 187 IPR018957 GO:0046872
Pral4065g00043 269 Pfam Zinc-ribbon 192 250 IPR039512 -
Pral4065g00043 269 Gene3D - 216 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4065g00043 Pral-Chr4065 206902 209400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4065g00043 7 263 C2H2 Transcription Factor Family AT3G18290 39.098 9.01e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4065g00043 K10144 - gmx:100812709 503.056