Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4065g00042 ATGGCTCAATCCTCTCAATTCGGCTGCAAACACTACAGAAGGAGGTGCAAAATCAGAGCGCCCTGTTGCAACGAAATCTTTTACTGTCGCCATTGCCATAATGAAGCTAAGAACTCCGACGACGTCAATCCCGTCCATCGTCACGATGTCCCCCGCCACGACATTATAAAGGTCATCTGTTCTTCATGTGAAACAGAGCAAGATTATTGCATCAACTGTGGAATGTGCATGGGGGAGTACTTTTGTGCTGCTTGCAAATTCTTCGACGATGATATTTCGAAGAACCAATACCACTGTGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTCTTCCACTGCAAGAGATGTGGCTGTTGCTACTCCAATGTGATGAAAGAAGGACACCGGTGTGTGGAACGAGCAATGCATCACAATTGCCCTGTTTGTATTGAGTATCTGTTTGATACCTTGAGAGACATCACCGTCTTGCCTTGCGGCCATACTATACATTTGGAGTGTGTTAGAGAGATGGAGAAACATTGCAGGTATTCATGCCCTGTTTGTTCAAAATCCATCTGTGACATGTCAAGCCTGTGGAAGAAGCTTGACCAAGTGATCGCTTCAACGCCAATGCCTGAAGCTTACAAAGACAAGATGGTCTGGATATTGTGCAATGATTGTGGGGTGAACTCTCAAGTGCAGTTTCACGTCGTCGCTCATAAGTGTCAGAGTTGCAATTCATACAACACAAGACAGATACAGGGAAGCCCTACCACTGCATGCACTTCTTCGGTGGCGGAGATGGTGAGATGA 801 0.4607 MAQSSQFGCKHYRRRCKIRAPCCNEIFYCRHCHNEAKNSDDVNPVHRHDVPRHDIIKVICSSCETEQDYCINCGMCMGEYFCAACKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGCCYSNVMKEGHRCVERAMHHNCPVCIEYLFDTLRDITVLPCGHTIHLECVREMEKHCRYSCPVCSKSICDMSSLWKKLDQVIASTPMPEAYKDKMVWILCNDCGVNSQVQFHVVAHKCQSCNSYNTRQIQGSPTTACTSSVAEMVR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4065g00042 266 Pfam Ring finger domain 141 184 IPR001841 -
Pral4065g00042 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 214 IPR013083 -
Pral4065g00042 266 SMART ring_2 142 184 IPR001841 -
Pral4065g00042 266 SUPERFAMILY Zinc hairpin stack 78 135 IPR037275 -
Pral4065g00042 266 FunFam RING finger and CHY zinc finger domain-containing protein 1 213 256 - -
Pral4065g00042 266 ProSiteProfiles Zinc finger RING-type profile. 142 185 IPR001841 -
Pral4065g00042 266 Gene3D - 215 255 - -
Pral4065g00042 266 ProSiteProfiles Zinc finger CHY-type profile. 2 78 IPR008913 GO:0008270
Pral4065g00042 266 SUPERFAMILY CHY zinc finger-like 4 76 IPR037274 GO:0008270
Pral4065g00042 266 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 5 252 - -
Pral4065g00042 266 Pfam Zinc-ribbon 189 247 IPR039512 -
Pral4065g00042 266 Pfam CHY zinc finger 9 87 IPR008913 GO:0008270
Pral4065g00042 266 ProSiteProfiles Zinc finger CTCHY-type profile. 77 141 IPR017921 -
Pral4065g00042 266 SUPERFAMILY RING/U-box 140 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4065g00042 Pral-Chr4065 206902 209400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4065g00042 7 260 C2H2 Transcription Factor Family AT3G18290 38.722 2.13e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4065g00042 K10144 - gmx:100812709 492.271