Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4065g00022 ATGGGGAGAGCTCCTTGCTGTGACAAAGCAAATGTGAAGAAGGGGCCATGGTCACCAGAAGAAGACACCAAGCTGAAGGAGTACATAGAGAAGAACGGAACAGGAGGCAATTGGATCGCTCTTCCTCAGAAAGCAGGTCTAAAAAGGTGTGGGAAAAGTTGCAGATTGAGGTGGCTCAACTATCTGAGGCCCAACATTAAGCACGGAGAATTCTCCGATGAGGAAGACAGAATAATATGCACCCTCTACGCTAATATCGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGCAGGACAGACAATGATATTAAGAACTACTGGAACACCAAGCTCAAGAAGAAGCTCATGGGTTTGCTTCCTCCATCCAATCATCAGATCAGGAAGCCTCCAGCATTATTTCAATCCTCTCATCATGATCAAAACCCACCATTTACTTGGCAATCATCATACAGAGACTTAAGCTCTTACTACCCTAGCCCATCATCAACTATATCCTTCAACGGCCTCGAGTCCACTTCTCTTGTGCCTTCAACTTATAACAATTCAACATCATCAACAGCCACCAATTTTCCTTATTTTCAAAACCAAGAGGCCTCCTTGGCTGGTGGTCCGATGCAGTATTACTACATGTTTGGAAGTGAAGGAAGTTGCAGCACCTCATCGGATGGAAGCTGCAGTCAAATCAGCCATGGCCGAGGGGACGCCAAACCGGAAGAAATGGGTTTTCAATTCCATCACAATTACATGTCCAATGGCTGTGGGTTTGATCAGTTGAGCAGTAAGTTCATGCCCGGAGGTGAAAGTAGTATTAACCAGTGGACAGAGAAGCCAAGTGGGTACTTTGGGCAAACCCCATTAATGGATTATGGAATTGAGGAGATAAAGCAGATGATCAGTGGTAATAACGGGATATATAATAACATTGAGGAAAACAAGAGAGAGGAGAAGGGGATGATGTACTGCTACTACTGA 978 0.4499 MGRAPCCDKANVKKGPWSPEEDTKLKEYIEKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPPSNHQIRKPPALFQSSHHDQNPPFTWQSSYRDLSSYYPSPSSTISFNGLESTSLVPSTYNNSTSSTATNFPYFQNQEASLAGGPMQYYYMFGSEGSCSTSSDGSCSQISHGRGDAKPEEMGFQFHHNYMSNGCGFDQLSSKFMPGGESSINQWTEKPSGYFGQTPLMDYGIEEIKQMISGNNGIYNNIEENKREEKGMMYCYY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4065g00022 325 CDD SANT 70 111 IPR001005 -
Pral4065g00022 325 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pral4065g00022 325 Gene3D - 69 139 - -
Pral4065g00022 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pral4065g00022 325 SMART sant 13 64 IPR001005 -
Pral4065g00022 325 SMART sant 67 115 IPR001005 -
Pral4065g00022 325 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pral4065g00022 325 PANTHER OS09G0431300 PROTEIN 1 299 - -
Pral4065g00022 325 CDD SANT 16 62 IPR001005 -
Pral4065g00022 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pral4065g00022 325 Gene3D - 7 68 - -
Pral4065g00022 325 FunFam Transcription factor RAX3 7 68 - -
Pral4065g00022 325 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pral4065g00022 325 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pral4065g00022 325 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4065g00022 Pral-Chr4065 123636 125519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4065g00022 1 127 MYB Transcription Factor Family AT5G57620 85.827 3.46e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4065g00022 Myb_DNA-binding 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4065g00022 K09422 - qsu:112023410 359.377