Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4064g00099 ATGAGTAACAGACGACCTGAACCGCATGTTGCGCAACAAATTCGGCGTGACAGGTTGAGAATCCAGAATAGCTCCCAGCATTCAGAAGGTTTCCCAAGCAATCTTGAACGATTATCTTTACGACCAGGGATCAGTTCTGATCTTCTTCAAGTTAGGAGTGTGAGGAATGCGAATATGCTTTACGAACCTGCTTTCTATTCATCGGAGATGGTCAATTTTTCATCGGTTTCGAATCCTTTAGCTGAATCCGGTAGGCTGATGACGATGCCTCAGCTTGCTTCATTCCCCTATTCATCAAACCCCGCTTCGTCCAGCTTTCATTCTTCTCTCGAAGAGCAATGCGAAGTACGTAACTTAGGCTATTGGAGAAACATTGGGTCACACCAAGTCTATGATTGGATGCCTAACTATGCCTCTAGTTCGGCGACTGACGAAAGCAATCCTAATCCTAATTCCACTTTTGGCGTAGCAATCAATAATGAACTCACAGGTGTACAGTCTTCCTCTCTGAACAATCCGTCAGATGAAACGGCGAGCCGGGAAAGCCAACGGCAATTAGGGGAGATTCATCCAAACTTTATGCGGGATGTAGTCAAGTCAGCTTCTATCAGTGGGCAAGGGTCAGAAATGGCTTCAATAATGCAAGAAAGTGGCCATGGAATGTGGGTGGGAAACGGAAATCAACTTTTTCTTCCAAACTATGGAATCCAATCAAATCAGTTGCGTCTTGGAAATCCTAATTCTTGCACTAATCGAACGATCGATAGTTCTCTCGGTTGCAAAGATATTGATGAATGCTCGGGTCGTCCAGTGTCCGACTCCAATAATCAGGGCTTATCTTTATCGCTCTCATCGAATTCACAGTCTGCGCATTGCAGATCGGATGACCACCAATCGCGGTGTGTGGTATCTAAGGATCCTTCATGCCCAAAACCTTTGAGATCTGTTTTAAATCCCTCTTCCAATGCTGGAGACCGTGTCAAATCGATTCAAAACATGGTGGTGGGAACACCTTCGAACATTGATTATCGAAATGTGGGGCCTCTCGGCCCTTTCACGGGGTATGCTACCATATTGAAGAATTCAAATTTCTTAAAGCCAGCGCAACAGTTGTTAGAAGAAATCTGTGGTCAATCCCGTGAAAAACTTACGAAAGGACATGATGTTTCTGGGAGGGTTTCTGGAGAAGCTGGCGCTTCCACTTCTGCTGACGCTGTCAATGCAACAAATGAAAGTGATGTTGGTGGAACCAGGAGTAGCTCTCACCCTTCTCGGCCAGAGTATCAGCAAAGAATGGCTAAGTTTCTGTACATGCAAGAGGAGGTTATAAGAAGGTACAAGCAACATCAGCAGCAAATGGAAATGGTTGTTTCATCCTTTGCGTCAGTTGCGGGTCTTAGTTCTGCTACTCCTTACATCTCCAAGGCTCTCAAGTCAGTATCAAAGCACTTCAGAGGCCTAGAAAATGCTATCTCCGATCAAGTTAAGCATATAAGAGAAGTTTTGGGAGAGGAATTATGTGCACCTACCGGTGGTGGTACTGTTACTTCTACCAGTGGCCAACTTGACAGCAATATGGCGCGACTCAAGTTCTTGGACCAAAGCTTTCAAAAGAACAAATTCATTGTGGGCGGCACAGGCTACGTGGAACACCAGCAGCATGCCTGGAGGCCCCAGCAGAAAGGCTTACCAGAGCGTGCGGTGTCAATTCTTAGGGCTTGGTTGTTTGATCATTTTCTTCACCCGTACCCCACGGACGCTGATAAACACATGCTAGCTGCTCGAACAGGTCTGTCTCGAAACCAGGTATCAAACTGGTTCATAAACGCCCGAGTACGTGTCTGGAAGCCAATGGTAGAGGAAATACACATGCTTGAAATGAAAGGCTTGACGAATGAAAAAGACACCCAGAAAGCTGGTAAAAACGAGGGAGCCCGTGCCATTGAGTCAGGAGGAAATCAATTGCGGTGTGTAGAGAGTAATGTGGATGAGGATCAGGTGGCTGGCTTAGATGCACAACAATGGAGCCAAGAGAAGCGATCGAAGCTGGAATGCCACATTACGCCCAGCATGGAGCACCATCAATTAATGGGTTTTGTCCCTTACTCAAGCGGTGAGGTTGAGGCTGGGGGAGTTGGCCCCGTCTCACTAACGCTGGCTCTCAAACATGGCGACGTTGAGGCGATACAGCAACACCACTTTGGAGGGCATGTCAGCAATGATTTTGTTGGTTAA 2235 0.4658 MSNRRPEPHVAQQIRRDRLRIQNSSQHSEGFPSNLERLSLRPGISSDLLQVRSVRNANMLYEPAFYSSEMVNFSSVSNPLAESGRLMTMPQLASFPYSSNPASSSFHSSLEEQCEVRNLGYWRNIGSHQVYDWMPNYASSSATDESNPNPNSTFGVAINNELTGVQSSSLNNPSDETASRESQRQLGEIHPNFMRDVVKSASISGQGSEMASIMQESGHGMWVGNGNQLFLPNYGIQSNQLRLGNPNSCTNRTIDSSLGCKDIDECSGRPVSDSNNQGLSLSLSSNSQSAHCRSDDHQSRCVVSKDPSCPKPLRSVLNPSSNAGDRVKSIQNMVVGTPSNIDYRNVGPLGPFTGYATILKNSNFLKPAQQLLEEICGQSREKLTKGHDVSGRVSGEAGASTSADAVNATNESDVGGTRSSSHPSRPEYQQRMAKFLYMQEEVIRRYKQHQQQMEMVVSSFASVAGLSSATPYISKALKSVSKHFRGLENAISDQVKHIREVLGEELCAPTGGGTVTSTSGQLDSNMARLKFLDQSFQKNKFIVGGTGYVEHQQHAWRPQQKGLPERAVSILRAWLFDHFLHPYPTDADKHMLAARTGLSRNQVSNWFINARVRVWKPMVEEIHMLEMKGLTNEKDTQKAGKNEGARAIESGGNQLRCVESNVDEDQVAGLDAQQWSQEKRSKLECHITPSMEHHQLMGFVPYSSGEVEAGGVGPVSLTLALKHGDVEAIQQHHFGGHVSNDFVG 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4064g00099 744 MobiDBLite consensus disorder prediction 269 292 - -
Pral4064g00099 744 SMART prehox3 353 493 IPR006563 -
Pral4064g00099 744 CDD homeodomain 556 618 IPR001356 GO:0003677
Pral4064g00099 744 SUPERFAMILY Homeodomain-like 563 624 IPR009057 -
Pral4064g00099 744 MobiDBLite consensus disorder prediction 269 295 - -
Pral4064g00099 744 FunFam BEL1-like homeodomain protein 9 560 622 - -
Pral4064g00099 744 Pfam Associated with HOX 358 492 IPR006563 -
Pral4064g00099 744 MobiDBLite consensus disorder prediction 395 427 - -
Pral4064g00099 744 Gene3D - 560 622 - -
Pral4064g00099 744 MobiDBLite consensus disorder prediction 386 427 - -
Pral4064g00099 744 ProSiteProfiles 'Homeobox' domain profile. 576 617 IPR001356 GO:0003677
Pral4064g00099 744 SMART HOX_1 557 621 IPR001356 GO:0003677
Pral4064g00099 744 Pfam Homeobox KN domain 574 613 IPR008422 GO:0003677|GO:0006355
Pral4064g00099 744 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 203 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4064g00099 Pral-Chr4064 484273 489209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4064g00099 341 626 Homeobox Transcription Factor Family AT5G02030 46.713 5.67e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral4064g00099 POX 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4064g00099 - - pcin:129312762 1107.82