Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4064g00092 ATGCGGTGGATGCTACCATCTTTCTTGTCTCGAACCTCCCATGGTGGATGCTCCCCTTGGAGTTTGGCACTGTCACCTTTGCTTGAAGAAGAGATAGAATTTGGTGTATATTCTGTGTCCGAGGGAGTAGAATCAATTTGGGATGTCAGGGAAGTCAAGGTGTTTCGTGCTAATGGATGGACAACTGAGAAACATTTTCTCGTGAAGTATAAAGGCCTTGCTCATGTTCACAACCGTTGGGTACCAGAAAGTCAGTTACTTCTTGAAGCTCCTCCATTGCTGTTTGAGAAATTTAATCAGAAAGATCAGGCCCTAAAGTGGAAGCCAGAATGGAGCTTACCTCACCGGTTGCTTCAGAAGAGAGCATTAATCTTTGCCCAACAGGATGGTGATCCCAGTAGCGGCCAGGCTATTGGTAATTCTGACTGTCATTATGAATGGCTTGTTAAATGGCATGGTCTTGGTTATGAACATGCATCATGGGAGCTGGACGACGCTTTGTTTCTTCATTCACTTGAAGGTCGGAGGCTGATTAAAGACTATGAAGATCGTCACCAGAGGGCAAAGAGAGTTCCTTTATCATCCAAAGTTGATAAGAAACTAGACCGCATTACTTCTTTTAGCAAATTATCTCAGACACCTGGTGGATTTCCACCTGGATTTGGTATCAACAATTTGGATGCAGTTAACAAGCTGCGTGAGCATTGGCACAAGGGTCAGAATGCTGTTGTATTTGATGACCATGACAGAATGGTGAAAATGGTTGCATTCATCTCATCTCTGGTCTCTAATACATGTCGACCTTTTCTCATTATCTCAACTTCTGCTGCTCTCCATTTATGGGAGTATGAGTTTTCTTGTTGGGCCCCATCTCTCAATGTTGTTATTTACAGTGGAAACAAAGAGATTCGTAGAAGCATTAGGAAACTAGAATTTTATGGGGAAGGTGGCTGTCTGCTTTTCCAAGTGCTTATAGTACTTCCAGAGATCATCATTGAGGATCTAGAGGTTTTGGAAGGCTTAGAATTTGAAGCAATCATAATTGATGAGTCCCAGTGCTCAAAGATCTCATCTTATTTGAAGCAAATTAAAATGTTAAAGACAGATTTCTGGATTCTTCTATTCAGCGGCCAACTAAAGGATAGTGTTGTAGAATATCAAGATATCCTGGCTTTTCTTGATCACCAGAGTTACAATGAAGATAATGGTGATTTAATCTCGAATTCCAGTGATATTGGTCAACTAAAGGATAAGCTGTCAAGTTTTGTTGCATATAGATGCAACTCTGACTCCTTTAGGTTTGTTGAGTATTGGGTTCCTGTAAATATCTCCGATGTGCAACTTGAGCAGTATTGTGCTGCTTTACTTTCAAACTCTTCAATACTACGCTCACAATCAAAATCTCATGTCACTGGGGCACTTCATGACATTCTTACGACTACCCGGAAGTGTTGTAATCACCCCTATCTTGTTGATGAATCCCTACAAAGTTTACTTATCAAAGATCTTCCACCGGCTGAGATCCTGGATGTTGGAGTAAAAGCAAGTGGGAAGCTGCAACTTCTTGATTCCATGCTCATGGAATTGAAAAAACAAGGTCTGAGGGTGCTTATTCTTTTCCAGTTCCTAGGTGGTTCTGGGAGGGTTTCAATTGGAGATATTTTGGATGACTTGATACGTCAAAGATTTGGTCCCGATTCATATGAAAGAATTGACAAGGGTGTTTTGAATTCTAAGAAGCAAAGTGCTCTGAAAATGTTTAATAACAAGGAGCATGGGAGATTTGTACTTTTATTAGAGACAAATGCTTGCCATCATAGCATCAAATTGTCATCAGTTGATACCATTATCATTTTTGATAGTGATTGGAACCCATTGAATGATATAAGGTCCCTTCAGAAAGTAGCACTTGATTCACAGTTGGAGCATGTTAAAATATTTCGCTTGTATTCGTCTTTCACTGTTGAAGAAAGAGCCCTAGTCCTTGCTAAGCAGGATAGACCGCTTGATAGCAAATTGGACCTAAGTTGGAGTACTAGTCACACGCTGTTGATGTGGGGCGCATCATCTTTATTTGATGATTTAAAAGCTTTTCATGATGGTAAAACTGATATCTTAAGTGTGAACTCCTCATCTGCACAATTATCTTTGAAACAAGCTCTACATGAATTCTTATCCATACTTAAGCAAAATGGTGAAGATACTGACACAAGGGACTGCTCATTTTTATTGAAAGTCAAGCAAAATGGATTAAAATACTACCCAAATTTTTCTTTGCTTGGTGAGTGGAAATTTAAGTCACTGGATTCAGAGCCATACCACTTATTTTGGACAAAAGTTTTGGAGGGCAAAAATCCACAATGGAAATACTCATGCGGTTTATCTCAAAGGAGCCGGAAAAGGGCTCAGCATATGGATGGTTTGGGAAAGAGGTCTGACTTTGAGAATGAAGAGGTAGTGAAAAAGCGCACAAAATTTATAAATAATGCTGATCAGCCTTATTCAAAACGTGAAGGTGAAAAATTATCCGCTGGAAACAAGGAAGGAAATTTTGGAGAATCAAGGGAAAGACCTCAAGGCAATGATGTTGAATTCCTGAAAGCAAGGAAATCACGTGATGAGCAGAGGAGCTTACATCTTTCTCTGAAGTCAGAAATAGCTAAGCTTTGTGGAATCCTTGATGTCCCAGATAATGTCAAGAGGATGGCTGATGAATTTCTTGATTATGTCATGAACAACCACCATGTGAATAGTACTCTTCCAAAGTCAATATTGGAGGCTTTTCAAATTGCTCTGTGCTGGGCCGCAGCTGCTTTGGCAAAGCACAAGATTGACCATGAAGCTTCCCTTATGCTTGCAAAACAGCATCTAAAATTTGATTGTAGGAAGGATGAGGCAAATGTAATTTATTCAATGTTGCGGTGTCTGAAGAATATATTTTTGCATCGAACAGGAAATTACAATGTCACTGGCTCTCCAAAAGCTTCTGCATCTGGATTATCTGATAAGAATTATTCCTGTACGGGCTTGGCACTAGAAGCTGAATTGGCTAAGAAAGATGTCTTAAAAAGCATTAAAGAAATTCAAAAGAAATGCCAAAAGAAGCTGAGGAAGTTACTCTTTAAGCATCAAGAAGAAAAGAACAAGTTGGATGCAACATATGAGGAAAAAAGGGCCGATCTTGAGAAAAAGTACAAAATAGAATCAGCTGTTATTCGGTCCCGTTCTCCTAATGATGTGATCAGATCAGAAAACCTCAAGAATTTAGATATTGAATATAATGAAAGAATTGAAGATCTGAAGCATCAGTACGAAATGCATCTCAAAGATCTTGAGAATGTCCAATCGACAGCAAGGCAAATGTTACAGAATAGGGAGGTCGCTTGGGTGGAAGATGTGAAGTCTTGGGCACAAGATGAATTGTTAAACGCACTTCCTTCAAAAGAACATGGGAATGGGATAGAATACTTGAAGACTAGCATGCAAGCTGAGCCTGACTATGATCCCAAGAATAGGTGCCTTGTGTCCAATCTTGTTACTAAGGATACTAATTTTGATAGAACAGTTGAAGCCATGATAGGGACTCGTCTTGGATCATCTAGAACTCCTGAAATCATGTCCCCTATGCTTGTACAGTGCGGTGATCCAGTTGATGGGCAAACTCCTCCGGTTGAGGCTGCTAGTGCTTATGAGGGCCATGATAGAGCTCAAAACGTATGTGATAGTCAAGGGAAAATTATCTCCGTGCCTGCCCATCCAAAAGAACATAATGTCAATGGAGCCACACGCATGATGAACGAAGGGGAAGGACATAATATTTTCTATGATGGTTGCGGGGAAAAAACTGTGCCTGATGGCTCAGAGAAGGATACAGCCGTGGATCCTTCTTCATCCAGGGAACTAATTCCTGATAGAAGTCCATTGAATGTTTCAGATAGAGAGTTATCATCAAGACAATGTGAAAGTCCACCGTTGCCAGATCAGCAAACTTCTCTTGAAGTCTCATTATGCATACGTGATGGACAGGTCCCAATTGAAGTGCCTGAAACTAGTTGTGGAATAGCTGAAGGTAATAAGGGCGGAGAGCACCAAAGAGATGGGGTATTGTTGGATCAAACTGCCACATCAGAGGAGCGGGAACAGATGTCAAGAACCATGAACAATAACACTTTGTCCCAGGCACTACAAGATTCACCTGCCTCTTTATTAACATCCCCCAGAATGGTTGATAAAGATGCAACGGTGGGAGAAATACAGAATTCTTCGGGACTGGTTGAACAGTTATCTAATCCAGCTGATATTATTCCAGCTAATCAATGTAATCTGCAGTCAGTCGTGGAGCCTCTAGAGCAGGTGCAGGAATTACCATCTGCAGAGTGCCTTGCTTCCAACCAGGATACAGCTGGAGAAATGCAGATCTTTGCTCCGCAAGTTGAGCCTGTCTCTAGTCCTGTTGATGCTTTACCAGCTGGTCAATTTAATCATGACCCAGCCATGGAGCCTCTAGAGCAACTACAGCAATTACCTTCTGCAGCGGCCCCTGCTGCTAACCTGGACACTTCTGGAGAGTTGCTTAACTCTTCCCAGCAAGTTGAGCCAGTCTGTCGACAGGATAATGGGGCACAAGCCAATGGATTGAATCATGAGTCACGGGTCAGGGAGCTTCTACAGCAGATGCAGCAACTTCCGCCTGCTGTCCCTCCTAATTCCACCCACAATCCATCAGTGGCAACTGAAACTGAACTCCGGTCAAATAATGAAGATTCTCTGTGTGGCCAGGTTTCCCCTGCACCAATGGAGGTTACAAATCAGGCTGTCGTTCATTCTGCCTCTGAACTTGATTCACACACACCTGTTGGTACATGCAGAACGCAATCATTAGGCACTAGAAATGTGTTCACTCCTCCAGAGATCAATAACCGTCCTAGACAAACTACAAGCCAATCAGCAGACACGGATCCGTTAAAGAATGAATTGGACAGATTACTAAGAGAGTCAGAGCAAACCTTGAAATACTATGAAGATATGAAATTGCAGTTGAAATCTGATTGTGAGAGAGAGCTGGAGGAAACTCGCAGGAAGTATGACGTCAAGTTACAGGAGAGAGAGCTTGAGTTTCATCTGAAAAAGAAGAACCTGGAAACAAATATCAACTTAGTTCTCATGAATAAGATGTGGGCAGAGGCTTTTAGGTCCAAATGCATGGATCTTAGAGTATCCGGACCACAAGGAATGCAGCAAGATCCAAGTTTGGCACAGCAATTGGTTTGGACTTCAAGCCAGCAAAGAGATGTGAGGCCTTCCCAAGCAGCAAGTCCACCTCATGGGCCTCCTGCATCTACACTGCAGCATTTGGCCGCTGCTTCTAGCCCTCAAACCATGGCGCCACCTCCCCCTGTATCCAGTATGCGGACCTTCCCTCTAGGGAGCTCACAGATTTTGGTGCCACCCATGCCTGCTACGGCTAGCTCTTCACCCATGGTGCCACTTATATCTACTATAACTAGCTCGCAGAACATGGCACCCCCTCTAGTGGCTGCTTACAATGCACCTCCAAGGCCACCTCACATCAACTCCATTCCTCCGTTGGCAAACCATCAAGCTGGTAGTGGGTTCCGTACCACTCCTCCCCATCTCCAGCCTTATAGACCACCAACATCTGGCGTGTTGAGTCAACAAGCTCCTAGTAACAATCCTGCAATGCCCTCATTGCCTAACCATGCTCGACCAACACTTCCAACCAATACATCTGATCCTCATAATAGAGTGCAACGGCCTGAAATTCCTGTAAGGTTACCCATTCCTAACTTCTCAGCCAGGGAGCCAGCGATGGGTGGTAATTCTCAACTGGGTATGAATCTGTCAAATACTCTGTTACGTCCATCAAATGTGACATCATTGCAGCAATCTAAGTTTGGCACCGCTAGTAGCATGCGGGATGACTGTGTCCGTCCAGCTATGTCACCCAACGTAGTCTGTTTGTCAGACGATGACTAA 5997 0.4272 MRWMLPSFLSRTSHGGCSPWSLALSPLLEEEIEFGVYSVSEGVESIWDVREVKVFRANGWTTEKHFLVKYKGLAHVHNRWVPESQLLLEAPPLLFEKFNQKDQALKWKPEWSLPHRLLQKRALIFAQQDGDPSSGQAIGNSDCHYEWLVKWHGLGYEHASWELDDALFLHSLEGRRLIKDYEDRHQRAKRVPLSSKVDKKLDRITSFSKLSQTPGGFPPGFGINNLDAVNKLREHWHKGQNAVVFDDHDRMVKMVAFISSLVSNTCRPFLIISTSAALHLWEYEFSCWAPSLNVVIYSGNKEIRRSIRKLEFYGEGGCLLFQVLIVLPEIIIEDLEVLEGLEFEAIIIDESQCSKISSYLKQIKMLKTDFWILLFSGQLKDSVVEYQDILAFLDHQSYNEDNGDLISNSSDIGQLKDKLSSFVAYRCNSDSFRFVEYWVPVNISDVQLEQYCAALLSNSSILRSQSKSHVTGALHDILTTTRKCCNHPYLVDESLQSLLIKDLPPAEILDVGVKASGKLQLLDSMLMELKKQGLRVLILFQFLGGSGRVSIGDILDDLIRQRFGPDSYERIDKGVLNSKKQSALKMFNNKEHGRFVLLLETNACHHSIKLSSVDTIIIFDSDWNPLNDIRSLQKVALDSQLEHVKIFRLYSSFTVEERALVLAKQDRPLDSKLDLSWSTSHTLLMWGASSLFDDLKAFHDGKTDILSVNSSSAQLSLKQALHEFLSILKQNGEDTDTRDCSFLLKVKQNGLKYYPNFSLLGEWKFKSLDSEPYHLFWTKVLEGKNPQWKYSCGLSQRSRKRAQHMDGLGKRSDFENEEVVKKRTKFINNADQPYSKREGEKLSAGNKEGNFGESRERPQGNDVEFLKARKSRDEQRSLHLSLKSEIAKLCGILDVPDNVKRMADEFLDYVMNNHHVNSTLPKSILEAFQIALCWAAAALAKHKIDHEASLMLAKQHLKFDCRKDEANVIYSMLRCLKNIFLHRTGNYNVTGSPKASASGLSDKNYSCTGLALEAELAKKDVLKSIKEIQKKCQKKLRKLLFKHQEEKNKLDATYEEKRADLEKKYKIESAVIRSRSPNDVIRSENLKNLDIEYNERIEDLKHQYEMHLKDLENVQSTARQMLQNREVAWVEDVKSWAQDELLNALPSKEHGNGIEYLKTSMQAEPDYDPKNRCLVSNLVTKDTNFDRTVEAMIGTRLGSSRTPEIMSPMLVQCGDPVDGQTPPVEAASAYEGHDRAQNVCDSQGKIISVPAHPKEHNVNGATRMMNEGEGHNIFYDGCGEKTVPDGSEKDTAVDPSSSRELIPDRSPLNVSDRELSSRQCESPPLPDQQTSLEVSLCIRDGQVPIEVPETSCGIAEGNKGGEHQRDGVLLDQTATSEEREQMSRTMNNNTLSQALQDSPASLLTSPRMVDKDATVGEIQNSSGLVEQLSNPADIIPANQCNLQSVVEPLEQVQELPSAECLASNQDTAGEMQIFAPQVEPVSSPVDALPAGQFNHDPAMEPLEQLQQLPSAAAPAANLDTSGELLNSSQQVEPVCRQDNGAQANGLNHESRVRELLQQMQQLPPAVPPNSTHNPSVATETELRSNNEDSLCGQVSPAPMEVTNQAVVHSASELDSHTPVGTCRTQSLGTRNVFTPPEINNRPRQTTSQSADTDPLKNELDRLLRESEQTLKYYEDMKLQLKSDCERELEETRRKYDVKLQERELEFHLKKKNLETNINLVLMNKMWAEAFRSKCMDLRVSGPQGMQQDPSLAQQLVWTSSQQRDVRPSQAASPPHGPPASTLQHLAAASSPQTMAPPPPVSSMRTFPLGSSQILVPPMPATASSSPMVPLISTITSSQNMAPPLVAAYNAPPRPPHINSIPPLANHQAGSGFRTTPPHLQPYRPPTSGVLSQQAPSNNPAMPSLPNHARPTLPTNTSDPHNRVQRPEIPVRLPIPNFSAREPAMGGNSQLGMNLSNTLLRPSNVTSLQQSKFGTASSMRDDCVRPAMSPNVVCLSDDD 1998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4064g00092 1998 ProSiteProfiles Chromo and chromo shadow domain profile. 117 193 IPR000953 -
Pral4064g00092 1998 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 684 IPR001650 -
Pral4064g00092 1998 SUPERFAMILY Chromo domain-like 112 185 IPR016197 -
Pral4064g00092 1998 MobiDBLite consensus disorder prediction 1310 1330 - -
Pral4064g00092 1998 PANTHER HELICASE PROTEIN MOM1 736 1998 IPR039322 GO:0031507
Pral4064g00092 1998 MobiDBLite consensus disorder prediction 835 862 - -
Pral4064g00092 1998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 399 IPR027417 -
Pral4064g00092 1998 SMART chromo_7 40 103 IPR000953 -
Pral4064g00092 1998 SMART chromo_7 110 186 IPR000953 -
Pral4064g00092 1998 Coils Coil 1656 1676 - -
Pral4064g00092 1998 CDD SF2_C_SNF 503 649 - -
Pral4064g00092 1998 Gene3D - 103 184 - -
Pral4064g00092 1998 Gene3D - 1652 1733 - -
Pral4064g00092 1998 MobiDBLite consensus disorder prediction 1885 1925 - -
Pral4064g00092 1998 MobiDBLite consensus disorder prediction 1277 1330 - -
Pral4064g00092 1998 Gene3D - 434 670 IPR027417 -
Pral4064g00092 1998 ProSiteProfiles Chromo and chromo shadow domain profile. 41 110 IPR000953 -
Pral4064g00092 1998 MobiDBLite consensus disorder prediction 1885 1922 - -
Pral4064g00092 1998 MobiDBLite consensus disorder prediction 1757 1805 - -
Pral4064g00092 1998 MobiDBLite consensus disorder prediction 1610 1654 - -
Pral4064g00092 1998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 670 IPR027417 -
Pral4064g00092 1998 SUPERFAMILY Chromo domain-like 43 100 IPR016197 -
Pral4064g00092 1998 MobiDBLite consensus disorder prediction 1610 1653 - -
Pral4064g00092 1998 Pfam SNF2-related domain 252 491 IPR000330 GO:0005524|GO:0140658
Pral4064g00092 1998 Gene3D - 42 102 - -
Pral4064g00092 1998 Gene3D - 226 433 IPR038718 -
Pral4064g00092 1998 Coils Coil 1681 1701 - -
Pral4064g00092 1998 Coils Coil 1083 1117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4064g00092 Pral-Chr4064 426314 440165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4064g00092 570 669 RAD5 or RAD16-like Gene Family AT5G05130 27.723 9.34e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4064g00092 SNF2_N 2.3e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4064g00092 K11643 - aprc:113854369 1446.03