Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4064g00066 ATGAAGGAAGAAGCTGAGAAAAGCTTGGATCCACAACTATGGCACGCGTGCGCCGGAGGTATGGTTCAGATGCCAGCTCTGAACTCCAAAGTCTTCTACTTTCCTCAAGGCCACGCCGAGCACGCCCAGGCCGGCGTCGATTTTGCGGCCTCCTTGAGGATTCCACCACTCATTCCCTGCCGCGTGGTGGCCGTGAAATTCCTCGCAGACCCAGAAACCGACGAGGTCTTTGCCAAGATCAAGTTGACTCCTTTGAGAAACTCCGAGCTTGATGACGGCGACGGCGACGAAAATACTCACGGCTCTGAAAATTCGGAGAAGCCCGCGTCTTTTGCCAAGACCTTAACCCAGTCCGATGCTAACAATGGTGGAGGCTTCTCTGTCCCGAGATACTGCGCAGAGACCATATTCCCACGGCTCGATTACTCGGCGGAGCCCCCGGTCCAAACCGTGATTGCGAAGGACGTCCACGGGGAAATTTGGAAGTTCAGGCATATCTACAGAGGGACACCCCGTCGTCACTTGTTGACAACAGGGTGGAGTACTTTCGTCAACCAGAAGAAACTCGTAGCAGGGGACTCTGTCGTGTTCCTGAGGGCCGAAAATGGCGATCTCTGTGTGGGGATTCGCCGTGCAAAGCGTGGGATCGGCGTTGGATCCGACGGCATCTCCGGTTGGAGCTCTGGTGCGGGGAACTGTGTGGGACCTTATGGGGCTCTCAGTGTGCTGTTAAGAGAGGAGAACAAGCTTATACGAAATAATTCGAATGGTGGGAATTCAAATCCTGGGAGAGGAAGAGTGAGACCAGAATCTGTGATGGAAGCCGTGACACTTGCTGCGAGTGGTCAGGCATTCGAGGTTGTTTATTACCCGCGAGCAAGTACTCCTGAGTTCTGTGTTAAGGCTGAGGCTGTCAAGGCAGCCATGAGAATTCAATGGTGTTCTGGGATGAGGTTCAAGATGGCCTTCGAGACTGAGGATTCTTCCAGGATTAGCTGGTTCATGGGCACTGTTGCTTCTGTTCAAGTTGTTGATGCTATTCGCTGGCCCAATTCTCCTTGGAGACTTCTTCAGGTTACTTGGGACGAGCCAGATTTGTTACAGAATGTGAAGAGGGTTAGTCCATGGTTGGTTGAACTGGTATCGAACAGACCGGTCATCCCTCTCATGCCGTTCTCTCCTCCTCGGAAGAAGATGCGGCTTCCTCAACACCCAGACTTCCCCTTTGAGGGTCACTTCACGATTCCGACGTTTCCCGGCGGCAACCCCCTCGGGCCCAGCAGCCCCTTGTGTTGTCTTTCCGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTCGGAATATCTCTTTCAGATCTCCACCTAAGCAATAAATTGCAGTTGGGGCTGCTTTCAAATAACATCCAGCAGCTTGATGTGCATCACCCTGGGATTTCTAATGGCCATATAATGATGAGCCATGACAAGAAAAATGAGAGCTTGTCATGCTTGCTTACCATGGGAAATTCTAACAAGAGTTTGGAGAAATCTGATAATGCGAAGAGACACCAGTTTCTGCTTTTTGGACAGCCAATACTGACTGAGCAACAAATTTCTCAGAGCTGTCATGCTGAAGTGTGGTCTCAGAACTTTTCGCGCAAGAATTTGCCAGACGAATGTAAGGATAAAGCAAAGAGCTTCTTGGGTGGATCCCAATCCGGGGTTTCGCAGCCAGGATTATCTTCTACGACCGACTTCTCTTGGCAACTTGGCTTGGATACGGGTCATTGCAAGGTTTTCATGGAGTCAGAAGACGTGGGGCGCACTCTAGACCTTTCATCTCTCAGCTCTTATGAAGAGCTGTACCGGAAACTGGCCGACATGTTCGGGCTCGAAAGATCTGAGATGTTGAGCCGTGTGCTCTACCGAGATGCTTCTGGTGCTGTCAAACGAACTGGAGAAGAACCCTTCAGTGACTTCATGAAAACTGCCAAAAGATTGACAATTTTGACAGATTCGGGGAGCAAAGATATAAGGAGGGCGTGGATGACAGGATCTCGAAATGGAGATCATGGACTGGACGCATCAAACAAGACAGGCTTTCTGAGCATATTTGCCTAA 2109 0.5078 MKEEAEKSLDPQLWHACAGGMVQMPALNSKVFYFPQGHAEHAQAGVDFAASLRIPPLIPCRVVAVKFLADPETDEVFAKIKLTPLRNSELDDGDGDENTHGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKRGIGVGSDGISGWSSGAGNCVGPYGALSVLLREENKLIRNNSNGGNSNPGRGRVRPESVMEAVTLAASGQAFEVVYYPRASTPEFCVKAEAVKAAMRIQWCSGMRFKMAFETEDSSRISWFMGTVASVQVVDAIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNRPVIPLMPFSPPRKKMRLPQHPDFPFEGHFTIPTFPGGNPLGPSSPLCCLSDNAPAGIQGARHAQFGISLSDLHLSNKLQLGLLSNNIQQLDVHHPGISNGHIMMSHDKKNESLSCLLTMGNSNKSLEKSDNAKRHQFLLFGQPILTEQQISQSCHAEVWSQNFSRKNLPDECKDKAKSFLGGSQSGVSQPGLSSTTDFSWQLGLDTGHCKVFMESEDVGRTLDLSSLSSYEELYRKLADMFGLERSEMLSRVLYRDASGAVKRTGEEPFSDFMKTAKRLTILTDSGSKDIRRAWMTGSRNGDHGLDASNKTGFLSIFA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4064g00066 702 SUPERFAMILY DNA-binding pseudobarrel domain 104 214 IPR015300 -
Pral4064g00066 702 FunFam Auxin response factor 313 386 - -
Pral4064g00066 702 ProSiteProfiles PB1 domain profile. 590 670 IPR000270 GO:0005515
Pral4064g00066 702 MobiDBLite consensus disorder prediction 88 103 - -
Pral4064g00066 702 Gene3D - 589 674 - -
Pral4064g00066 702 Gene3D - 313 385 - -
Pral4064g00066 702 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Pral4064g00066 702 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Pral4064g00066 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral4064g00066 702 MobiDBLite consensus disorder prediction 88 109 - -
Pral4064g00066 702 SMART B3_2 111 213 IPR003340 GO:0003677
Pral4064g00066 702 CDD B3_DNA 110 211 IPR003340 GO:0003677
Pral4064g00066 702 FunFam Auxin response factor 109 213 - -
Pral4064g00066 702 Gene3D - 109 213 IPR015300 -
Pral4064g00066 702 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4064g00066 Pral-Chr4064 309944 313890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4064g00066 1 674 B3 DNA Binding Superfamily AT4G30080 60.637 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral4064g00066 B3 1.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4064g00066 - - qsa:O6P43_028379 1080.09