Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4064g00043 ATGAGTACAGAGAAAAAGCCTGTGAGTGAAGTACATGATGCGGTTTCTTGTCAGAGAACAGCTTCTCTTCCAGTTCACAAGGTTGATGATACAATGGCAATAAGTGAAGAGTCCACACATACTCGTCGCTGGAAGCGAGATAATCTTTCACTACAAATACCCTCAAGAACATCAGAAGAGTCTTCTCAAGATTTTGTAACAATCAAGATGCCCCAGACTCCAAGTCCTTCTCCAACTCCCAAGAGAGTGAATTTCCTGGTGACTTCTCTCTCTGTTGATACCTCCGTTAATAAATCTCCGGGACCTTTAACATCAAGAGGAAGACCATCCATAAGAAGTTTCTTACCAAAACTGAACTTCATTTCCCGGGCGTCATCAGATGTTGAAAAGGGTTCTACTGTAGCTTCAGAAGGTTCCTCTTCAGGCACTCGAGAAAAGCCTTCAATCTCAAGAACCTTGTCCCTTACTAAAATATTTACTCCCAGGATTAAGAGGACCTCATCATTGCCAGTGGATGAATTTGCACATTCAAATTCAGAATCTGCTCACGCTGGAACTGTTGGCACTCCTTTGCCGAGGAGCTCTGCTCAGAGGCAGATAGTTCGCTCTCTTTCGGTGCCTGTCAACAATAAAGAGAAAAGCTTAAGGAGAATGGATTCATTTTTCCGTGTTATTCCTTCCACCCCACGAGTGAAGGATGGAGTTGAATTATCGACAGCATCCCCCACAAAGGATTCTGAAAACGATATTGATGATGGTGAAGACATAGCTGAAGAAGAGGCTGTATGCAGAATTTGTATGGTTGATCTATGTGAAGGGGGTGAAACTTTCAAGCTGGAATGCAGCTGCAAAGGTGAACTTGCTCTAGCACACCAAGAATGTGCTATTAAGTGGTTTAGCATCAAAGGAAACAAAACATGTGATGTGTGCAAAGAGGAGGTTCGGAACCTACCTGTCACTCTTTTGCGGATCCAAAGTGTCCGGGCTCGACATACTGGAGCAAGCAGGTCTCAGATGGACGATGTGAATGAATATAGGGTTTGGCAAGAAGTACCTGTTCTAGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGGAAAATGGGTACTAAGGCAATTGCCATATCTCTTCCGTTTTCATGTGTATTGGGTGTTCTCTCTTCCATGACATCATCCACAATGGTGAAGAGCAGGTTCGTCTGGATTTATGCATCAGCACAGTTTGCTCTGGTGGTTCTGTTTGCTCATATATTTTACTCCTTGGTAATTGCGAAAGATGTACGCTTCGACCATAATATCCATGTGCAGGCAATCATGTCGATACTTCTTGCAACCTTCGCAGGGTTTGGTGTGGTAATGAGTGGAAGTTCAATTCTTGCGGAGTTCTTCAGATGGAGAAGAAGATGGCAGGCTTCATCAGAGCAGAATAATACTGGTCCTCAAGTGATGGCTCCTCATTCAGGTTCTTCCACAGCCAGGACGCAGAATCACCAAAACTCGAGTCAGATACCGACACAAGCTAATAATGAGAATGCTTCTTCATAA 1563 0.4376 MSTEKKPVSEVHDAVSCQRTASLPVHKVDDTMAISEESTHTRRWKRDNLSLQIPSRTSEESSQDFVTIKMPQTPSPSPTPKRVNFLVTSLSVDTSVNKSPGPLTSRGRPSIRSFLPKLNFISRASSDVEKGSTVASEGSSSGTREKPSISRTLSLTKIFTPRIKRTSSLPVDEFAHSNSESAHAGTVGTPLPRSSAQRQIVRSLSVPVNNKEKSLRRMDSFFRVIPSTPRVKDGVELSTASPTKDSENDIDDGEDIAEEEAVCRICMVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRARHTGASRSQMDDVNEYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTKAIAISLPFSCVLGVLSSMTSSTMVKSRFVWIYASAQFALVVLFAHIFYSLVIAKDVRFDHNIHVQAIMSILLATFAGFGVVMSGSSILAEFFRWRRRWQASSEQNNTGPQVMAPHSGSSTARTQNHQNSSQIPTQANNENASS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4064g00043 520 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Pral4064g00043 520 CDD RING_CH-C4HC3_MARCH 263 311 - -
Pral4064g00043 520 SMART ringv_2 262 311 IPR011016 GO:0008270
Pral4064g00043 520 MobiDBLite consensus disorder prediction 50 72 - -
Pral4064g00043 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 318 IPR013083 -
Pral4064g00043 520 PANTHER OS02G0165000 PROTEIN 30 484 - -
Pral4064g00043 520 MobiDBLite consensus disorder prediction 50 81 - -
Pral4064g00043 520 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Pral4064g00043 520 MobiDBLite consensus disorder prediction 176 198 - -
Pral4064g00043 520 MobiDBLite consensus disorder prediction 126 149 - -
Pral4064g00043 520 SUPERFAMILY RING/U-box 259 314 - -
Pral4064g00043 520 MobiDBLite consensus disorder prediction 480 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4064g00043 Pral-Chr4064 192645 197474 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4064g00043 249 317 C3H Transcription Factor Family AT2G37950 47.143 1.06e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4064g00043 - - gmx:100815566 706.442