Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4064g00042 ATGGCGGAACCTGGAAATACTGACCTCTCACTTTCAACCTCTAAAACCCTAAACCCTTCTGATCCAATCAACGGTCCTCATTCATCTCTATCGCCTGCTAAAAGCGCTCAAATCCATCAGGAATCTTCGTCTCCCCCTGCCCAGCCTTCCGACGATGTCGTCTCGGGCGAGAAACGGAGGCGCGAGGACTCAGACTTTGGGGTCTCAGATCCTTCCCTTAACCCCTTGTGGAAAACCAGCCTCTGTTCTTATTTCCGGCGACATGATGGCTCCTGCAGCCACGGTAGTGAGTGCCGCTATGCCCACGGCGAAGGGGAGCTTCGGCCTCGGCCCGATAACACCTGGGACCCAACGTCAGAGCGGGCGAAGAAGGCGATGAAATCCGATACGGGCGAGAAATGTACAGTTTCATTGGGCGTAATGATGACTGAAGCTGTGGACGATGATGCTGATGGCGATGATAATGATGATTCCAATCACGCTCTTAGCAAATGCTTGGTGCATTTGCCGAGGAAGTGGGCTTCGGACAACTTGAGGGAATTTCTCAATCAAGAGGGTATACCTTTTAAATCTGCAAAGAAAAAGATAGGCATGCTGGTAGGATTTGTCACTTTTGAAGATCAAGAACAGTTGGAGAGCTCAACAAAGGAGCTGGAAGGCAAATTAATTGGCAGCAAAAGTTTAAAAGTTGCAGATGTTATTCCTCGATCATTTGATAAGAAAGTTGGTGATTCCATGTCAAAGACAAGAAGCCTCCGCGATGTGGTGACTCCTCTTGCTCATATGGCCTATGCTGATCAGTTAGAGCACAAAAAGGGCAATCTTACGCAGATTCTCAAGAGACTTACTAGAAATGCTCGCAAAGCTTGTCCAAGCGGTGTTTCTCTTCCTGAGTGGATTCTCAAGTCTAGTGACATAGGTGGTCTTCCTTGCAAACTAGAAGGTATTATTGGATCACCAAGGGTCAATGGATATCGCAACAAGTGTGAATTTTCTGTTGGACATTCTGTAGAAGGAAAAATAACAGTAGGATTCATGCTTGGAAATTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCTGTGAACTGTCCCAATGTTTCAACAATTGCACTCCGGTATGCTTCTATCTTTCAGGAATTTCTGCAGCATTCACAGTTACCGGTTTGGAATAGATTCAAGAATAGAGGGTTTTGGCGTCAATTGACGGTTCGAGAAGGAAGGACAAATGGAAAGGTTGCTGAAGCTGAAGATTTTGATGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACGATGGGCTTTGATAATGAGCTAGTAACTGGTGAACTTGAGAAACTCGCTCAAGCATTTGTTGCAGGAGCTAATGCATGTTCTCCACCATTGCCTCTCACAGCTCTGGTTGTACAGGATCACCAGGGAATATCCAATGTAGCACCAGCTGATGCCCCCCTGCGGTCGCTTCTCACTCCTAAGGCAGTTGGTGATCAAATAAATGAAAAAAATGGTACCATGGATGTCCGGATCCATGATTATATTAGTAACCTCCAGTTTTCTATATCTCCGACTGCATTTTTCCAGGTCAACACTCTAGCTGCTGAGAAGCTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGCTATTCGATATTTGCTGTGGGACAGGAACAATTGGGCTGACCTTAGCACATCGTGTTGGTATGGTGATTGGCGTTGAAATGAATGCTTCTGCAGTATCTGATGCTCAAAGGAATGCTGAGATTAACGGTATAAAGAATTGTAGATTTATATGTGCAAAGGCGGAGGATGTGATGGGATCTTTGTTAAAGGAGTACCTAAATAAACCGAAGGAGCAAGTTAATGTTCCCAGTATCTGTGGAACTGACGTTGACGAAATTTCTGAGGGGAGCACACGCCACGAAACTGAAAATGGTGAACGAGAATCTCGGTGTTCTGAAAATGGCAGGCAAGAAGATGAAATTGAGGTTCAGAAAGGGAGCGATTCTGAAAACGGGAATTCTTTGATGCAACGATTTAAAAATGTTGTTGCTATTGTTGACCCTCCACGTGCTGGACTCCATCCAACTGTAATCAAAGCTCTGAGGACTAATCAAGGACTGCGGCGACTTGTCTACATATCTTGTAATCCCGAAAGTTTGCTGGCAAATGCTATTGAGCTTTGCACGCCATCTCCCGTGAAAATGGAAAAAGGAAATATAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGCCTTGCAAGGCGTAGGGCCAAGTCCATGCCTATCTCGGAGGCCTTCCAGCCCATAAAAGCCATGGCTGTTGATCTATTCCCACATACTGACCACTGTGAACTGGTGATGCTCCTCGAGAGGTAG 2391 0.4588 MAEPGNTDLSLSTSKTLNPSDPINGPHSSLSPAKSAQIHQESSSPPAQPSDDVVSGEKRRREDSDFGVSDPSLNPLWKTSLCSYFRRHDGSCSHGSECRYAHGEGELRPRPDNTWDPTSERAKKAMKSDTGEKCTVSLGVMMTEAVDDDADGDDNDDSNHALSKCLVHLPRKWASDNLREFLNQEGIPFKSAKKKIGMLVGFVTFEDQEQLESSTKELEGKLIGSKSLKVADVIPRSFDKKVGDSMSKTRSLRDVVTPLAHMAYADQLEHKKGNLTQILKRLTRNARKACPSGVSLPEWILKSSDIGGLPCKLEGIIGSPRVNGYRNKCEFSVGHSVEGKITVGFMLGNFREGVTAVEEAVNCPNVSTIALRYASIFQEFLQHSQLPVWNRFKNRGFWRQLTVREGRTNGKVAEAEDFDGIAEVMLIVQVSTMGFDNELVTGELEKLAQAFVAGANACSPPLPLTALVVQDHQGISNVAPADAPLRSLLTPKAVGDQINEKNGTMDVRIHDYISNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGVEMNASAVSDAQRNAEINGIKNCRFICAKAEDVMGSLLKEYLNKPKEQVNVPSICGTDVDEISEGSTRHETENGERESRCSENGRQEDEIEVQKGSDSENGNSLMQRFKNVVAIVDPPRAGLHPTVIKALRTNQGLRRLVYISCNPESLLANAIELCTPSPVKMEKGNIDNRGWRNMSSAGLARRRAKSMPISEAFQPIKAMAVDLFPHTDHCELVMLLER 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4064g00042 796 ProSiteProfiles Zinc finger C3H1-type profile. 76 105 IPR000571 GO:0046872
Pral4064g00042 796 SMART c3hfinal6 76 104 IPR000571 GO:0046872
Pral4064g00042 796 Gene3D - 70 110 - -
Pral4064g00042 796 MobiDBLite consensus disorder prediction 53 67 - -
Pral4064g00042 796 CDD AdoMet_MTases 554 608 - -
Pral4064g00042 796 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 255 796 IPR010280 GO:0006396|GO:0008173
Pral4064g00042 796 Pfam tRNA (Uracil-5-)-methyltransferase 682 732 IPR010280 GO:0006396|GO:0008173
Pral4064g00042 796 Pfam Methyltransferase domain 552 610 IPR025714 -
Pral4064g00042 796 SUPERFAMILY RNA-binding domain, RBD 168 238 IPR035979 GO:0003676
Pral4064g00042 796 SUPERFAMILY CCCH zinc finger 75 109 IPR036855 GO:0046872
Pral4064g00042 796 Gene3D Vaccinia Virus protein VP39 491 795 IPR029063 -
Pral4064g00042 796 MobiDBLite consensus disorder prediction 637 670 - -
Pral4064g00042 796 ProSitePatterns RNA methyltransferase trmA family signature 1. 691 723 IPR030390 -
Pral4064g00042 796 Coils Coil 265 285 - -
Pral4064g00042 796 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 104 IPR000571 GO:0046872
Pral4064g00042 796 MobiDBLite consensus disorder prediction 1 50 - -
Pral4064g00042 796 MobiDBLite consensus disorder prediction 101 130 - -
Pral4064g00042 796 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 257 796 IPR029063 -
Pral4064g00042 796 MobiDBLite consensus disorder prediction 635 677 - -
Pral4064g00042 796 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 94 796 IPR045850 -
Pral4064g00042 796 MobiDBLite consensus disorder prediction 1 72 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4064g00042 tRNA_U5-meth_tr 3.3e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4064g00042 K15332 - qsa:O6P43_028361 1134.01