Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4064g00025 ATGTCAGAACAAGGCCTCTCTCTTCCTTCCACCATCAAAACCTTCCTCCCTCACTCGACCCCTAACCCTACTCATTCAAATCCCCTCAAGAAGAGGAGAAATCTCCCCGGAACACCAGATCCAGATGCAAAAGTGATAGCGCTGTCGCCAAAGTCCCTGATGGCCACGAACCGCTTCGTGTGCGAAATCTGCAAGAAGGGGTTCCAGAGAGACCAGAATCTGCAGCTGCACCGCCGCGGACACAACCTCCCCTGGAAGCTCCGGCAGAGAAGCGAAAAAGAAGCCGGCAAAAAAGTGTACGTGTGCCCTGAAAAGACGTGCGTCCACCATGATCCTTCCAGAGCGCTGGGAGACCTCACGGGGATAAAGAAGCACTACAGCAGAAAACATGGCGAGAAGAAGTGGAACTGCGACAGGTGCTCCAAGAAATACGCCGTTCACTCCGACTGGAAGGCGCACATCAAGATTTGTGGGACAAGAGAGTACAAATGTCTCTGTGGCACTCTTTTCTCCAGGAAAGACAGCTTCGTGACGCACAGAGCCTTCTGTGATGTCTTGGCGGAAGAAAATGCCCGAATAAGCTTCGTTCCCGAAGCACCCAGAATCCCTCAGATTTATCCAGGCTATGGAGGTTCATCAGAAACGTTGATCCAGGTCAATTCAAGCATGCCTGATTTGATGCAAACCATGAACATGCTCCCGAATTCCTTGTCGTCCTCCTGGGTGAAACCATACCCAGAAGCATCATTCGAAAGTCTTGCCAATCTGGCCATGTCTGGGGCATCTCATCGCCTACTGAAGGAGGAAGAAGAAGAGAACAAAGGGGGGTTGTCGTATAGCGCGAGCTCTTTGTATTGTAGTAATTATCAAAACCCATGGCAAGTAGGCTTGGCTCAGCCTCATCACATGTCGTCACCCACTTCACTGTTACAAAAAGTAAACCAGATGAGATCTACAGGAAGCAACCATGTCAACATTTTTGGCTTCATGGGCGGCTCCTTACCATCACTCTCCAGCAGCACTTCGTCGTTCAGAAACGGCGATGAGGCAGGACTATATTTCAAGAATACAGCAAATGGAACTGATGACCAAAGCTTGAACGACTTGGTGACGATCTCAAAAGGAAACTCGAATGTTGGAGTTGGAGGTGACGATTGTCATGGATTGGTACTGAATGATTCGAACTCGAGCCACTTTGTGATGAGAAGCCGCGGGGAGAATTTAGATCAGATGGAACTGGGTGGTTTAACCAGAGATTTTCTAGGCGTTGGTGAGAAAGAGTTAGCCGGGTTTAATGCAGCCGGCTCGGTTGCTCAGCCATGGAGCTGA 1329 0.4981 MSEQGLSLPSTIKTFLPHSTPNPTHSNPLKKRRNLPGTPDPDAKVIALSPKSLMATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLRQRSEKEAGKKVYVCPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWNCDRCSKKYAVHSDWKAHIKICGTREYKCLCGTLFSRKDSFVTHRAFCDVLAEENARISFVPEAPRIPQIYPGYGGSSETLIQVNSSMPDLMQTMNMLPNSLSSSWVKPYPEASFESLANLAMSGASHRLLKEEEEENKGGLSYSASSLYCSNYQNPWQVGLAQPHHMSSPTSLLQKVNQMRSTGSNHVNIFGFMGGSLPSLSSSTSSFRNGDEAGLYFKNTANGTDDQSLNDLVTISKGNSNVGVGGDDCHGLVLNDSNSSHFVMRSRGENLDQMELGGLTRDFLGVGEKELAGFNAAGSVAQPWS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4064g00025 442 Gene3D Classic Zinc Finger 93 183 - -
Pral4064g00025 442 MobiDBLite consensus disorder prediction 1 42 - -
Pral4064g00025 442 Gene3D Classic Zinc Finger 55 82 - -
Pral4064g00025 442 MobiDBLite consensus disorder prediction 1 31 - -
Pral4064g00025 442 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 424 IPR031140 -
Pral4064g00025 442 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Pral4064g00025 442 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Pral4064g00025 442 FunFam protein indeterminate-domain 12-like 38 106 - -
Pral4064g00025 442 SMART c2h2final6 59 81 IPR013087 -
Pral4064g00025 442 SMART c2h2final6 135 155 IPR013087 -
Pral4064g00025 442 SMART c2h2final6 100 130 IPR013087 -
Pral4064g00025 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Pral4064g00025 442 SUPERFAMILY beta-beta-alpha zinc fingers 58 155 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4064g00025 Pral-Chr4064 118889 120980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4064g00025 22 205 IDZ Gene Family AT3G50700 77.174 2.74e-106 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4064g00025 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4064g00025 K25870 - cave:132163616 407.527