Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4063g00024 ATGTCGACGGAAGAGCCCGCTGTAGTTGTGGAGTCTGTACAAGAACTAGCTGTTGCCGAGCCAGCCGAGGAGAAAGAGGCCGCAGATGCTGGTGGCAAGACCAAGAAAGCCAAGGAGCCAAAACCTAAGAAGGCTGCTGCTCCTAGATCTCGAAACCCTCCTGCGCATCCTCCCTATGAAGAGATGATCAAGGACGCAATTGTTACGCTGAAGGAGAGGACTGGTTCTAGCCAGTACGCGATCACCAAGTTTATCGAAGAGAAATACAAGCAGCTTCCGTCCAACTTCAGGAAGATTGTGTTGCTCCAATCAAAGAAGCTTGTGGCTGCCGGAAGGCTCGTTAAGGTCAAGGGATCATTCAAGCTTCCCTCTGTTAAGTCATCGGCGCCGAAGGCATCTGGGAATTCTGCTCCTGCAAAGAAGCCTGCAGCTGCTAAGCCTAAGGCTAAGCCAGCTTCTAAGCCGAAGGAGACGAAATCAATCAAGGCGGCCACTAAATCGCGTCCCAAGCCCAAAGCAGTCGCCAAGTCAAAGCCTAAAGCGGCTACCAAGCCGAAGGCCGCTCCGAAGCCCAAAGCTGCTCCGGCGAAGCAGAAGGCTGCACCGGCAAAGCCTAAGGCTGCTGCCTCTAAGCCAAAAGCTGCTGCTAAGCCCAAGGCTGCCGCAAGACCAAAGGCCAAGGAGAGACCGGCCAAGGCGTCTAGGACATCGACCAGGACATCGCCGGGCAAGAAGGCCCCTGCTCCTAAACCGGCACCCAAGAAAGCTGCGGCGTCCAAGAAAGCTCCTGCTAAAGGCGTTAAGCCTAAGAGTGTGAAGTCTCCAGCAAAGAAGGCTTCGGCAAAGAGAGGAAGGAAGTGA 861 0.5459 MSTEEPAVVVESVQELAVAEPAEEKEAADAGGKTKKAKEPKPKKAAAPRSRNPPAHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKYKQLPSNFRKIVLLQSKKLVAAGRLVKVKGSFKLPSVKSSAPKASGNSAPAKKPAAAKPKAKPASKPKETKSIKAATKSRPKPKAVAKSKPKAATKPKAAPKPKAAPAKQKAAPAKPKAAASKPKAAAKPKAAARPKAKERPAKASRTSTRTSPGKKAPAPKPAPKKAAASKKAPAKGVKPKSVKSPAKKASAKRGRK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4063g00024 286 MobiDBLite consensus disorder prediction 150 164 - -
Pral4063g00024 286 Gene3D - 50 160 IPR036388 -
Pral4063g00024 286 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral4063g00024 286 CDD H15 53 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral4063g00024 286 MobiDBLite consensus disorder prediction 119 286 - -
Pral4063g00024 286 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pral4063g00024 286 SUPERFAMILY "Winged helix" DNA-binding domain 52 132 IPR036390 -
Pral4063g00024 286 MobiDBLite consensus disorder prediction 271 286 - -
Pral4063g00024 286 MobiDBLite consensus disorder prediction 19 46 - -
Pral4063g00024 286 FunFam Histone H1 50 135 - -
Pral4063g00024 286 PANTHER HISTONE H1 25 270 - -
Pral4063g00024 286 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pral4063g00024 286 PRINTS Histone H5 signature 150 164 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pral4063g00024 286 PRINTS Histone H5 signature 180 197 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pral4063g00024 286 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pral4063g00024 286 PRINTS Histone H5 signature 202 221 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pral4063g00024 286 MobiDBLite consensus disorder prediction 165 185 - -
Pral4063g00024 286 MobiDBLite consensus disorder prediction 19 62 - -
Pral4063g00024 286 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4063g00024 Pral-Chr4063 94952 96261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4063g00024 50 124 Single Myb Histone (SMH) Gene Family AT1G49950 35.897 1.64e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4063g00024 K11275 - tcc:18613215 162.54