Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4063g00017 ATGATACGTAGACGAGAGGGGACTGATTGGGCTGATAACAAAACGATGGCGAATCAGGTGGTAAAAGTGAAGAGGGAAACTTTTGTAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGAGACGCCACCACCATATCTGAATGTCTTCATACGTTTTGCAGGAAATGCATCTATGATAAAATTGCAGATGAGGAATTAGAACATTGTCCAATCTGCAACATTGATCTGGGTTGCGTCCCCCTTGAGAAATTAAGGCCAGACCACAATTTACAAGATTTAAGAGCTAAAATTTTCCCCTTGAAGAGAAGAAAGGAAAAAACACCTGAGGCTGTTCCCTCTATAACAATACCAGCCAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCCAGAGTATCAACACAGGTAACCATGACTGGGAGAAGAACAAAACCTACTAGAAAGGCCAGCGGTCTGCGAGCCCCTTGTTTTGCCATTGAAAAGCCTGTAAAAAAGGAGGAATCAGTAGAAGATCATACGGAGAGTTCAAGCTCGCCAGACACTTCAAACAAGTTTACTCAGAATACCAGACAGAGTTTGTCCCCTCTTGAATCTAACCCATCCTTACGCACCAAAGAGGCAGATAGTGGAGCTGAACCATGGGAAACAAAATTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAAGTGGCAAGTAGGAGTAAATCTTTCAAGTCTAGTGTGCAGGGGTCTGATGCTAAACTAGAACCTGTACAAATAAATGAAAATGACTCTCAAGTGCCAAAATCCAAAAATAAAGAGAATAAGCGCAAAGCAAAAGTTGAGAACGAAAAAGGCGACACTGATCCTATCTCTTTGAATACAGCAAAGCCTAATAAATCACGCAAAGTTCGTCGTAAAAGGGAGCCTCTTTTCGGAGAACCAGGCATATCACCTCAAGCTGTTCTGGATGCAAACAGTGCTACATTCAAAAGGAGAACTGGTCCACTTTGGTTCGCCTTAGTAGCTTCTGAAGATCAGGAAGGAGACGCACCCATGCCCCAAATTCCTGCAAGTTATTTAAGAATAAAGGATGGAAGTTTACCTGTGTCATTTATCCAAAAATACTTAATGAAGAAGCTAGAGCTGAGCAGTGAAACGGAGGTTGAGATTAAATGCATGGGGCAACCAGTGGTCCCTACGCTACAACTATGTAGTTTGGTTGACTTGTGGCTGCAGACAGCATCTACGACACAGCGAATTCCCGCAACAATTGGGTCCTCGGCCAAGGATTTTGTAATGGTTCTAGCATATACGCGCAAGTTTCCACACGTTTGA 1332 0.4294 MIRRREGTDWADNKTMANQVVKVKRETFVACMTCPLCNKLFRDATTISECLHTFCRKCIYDKIADEELEHCPICNIDLGCVPLEKLRPDHNLQDLRAKIFPLKRRKEKTPEAVPSITIPARRKERSLSSLVVSTPRVSTQVTMTGRRTKPTRKASGLRAPCFAIEKPVKKEESVEDHTESSSSPDTSNKFTQNTRQSLSPLESNPSLRTKEADSGAEPWETKLDLWKPLNCLVEVASRSKSFKSSVQGSDAKLEPVQINENDSQVPKSKNKENKRKAKVENEKGDTDPISLNTAKPNKSRKVRRKREPLFGEPGISPQAVLDANSATFKRRTGPLWFALVASEDQEGDAPMPQIPASYLRIKDGSLPVSFIQKYLMKKLELSSETEVEIKCMGQPVVPTLQLCSLVDLWLQTASTTQRIPATIGSSAKDFVMVLAYTRKFPHV 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4063g00017 443 CDD RING-HC_PCGF 32 75 - -
Pral4063g00017 443 MobiDBLite consensus disorder prediction 240 304 - -
Pral4063g00017 443 MobiDBLite consensus disorder prediction 180 210 - -
Pral4063g00017 443 SUPERFAMILY RING/U-box 28 99 - -
Pral4063g00017 443 MobiDBLite consensus disorder prediction 164 179 - -
Pral4063g00017 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 118 IPR013083 -
Pral4063g00017 443 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 16 439 IPR044807 GO:0004842
Pral4063g00017 443 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Pral4063g00017 443 FunFam Polycomb group RING finger protein 3 18 118 - -
Pral4063g00017 443 Pfam Zinc finger, C3HC4 type (RING finger) 34 74 - -
Pral4063g00017 443 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Pral4063g00017 443 MobiDBLite consensus disorder prediction 129 217 - -
Pral4063g00017 443 SMART ring_2 34 74 IPR001841 -
Pral4063g00017 443 MobiDBLite consensus disorder prediction 240 264 - -
Pral4063g00017 443 MobiDBLite consensus disorder prediction 129 149 - -
Pral4063g00017 443 MobiDBLite consensus disorder prediction 265 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4063g00017 Pral-Chr4063 65851 72241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4063g00017 17 362 C3H Transcription Factor Family AT2G30580 56.125 4.60e-117 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4063g00017 K16277 - gmx:100793731 648.662