Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4048g00017 ATGGATAGATTCACCAATGGTGTTGATGGTACTCAAATGGGAGAAATTCGAGACTCGAGCTTTCAGAGGCAAGCATGGAAGTCAGTTTATGATGAAGCTCACAAGTCAGATAGGCCTCTCAAAAGAATCTGTAGCCCTGAGCGTCAAATCCTATGCCATCCCTCTGTTTCTCTCACTCTGCCTCCACCTCCTTCATCGTCTTCTTCAAGTATCACGTTTCCCTTTGCCCTTGATGAGTCTCCCTACCAATCTACAGCCACAACTTATCAGCCCTTGAAGTCTTTCGCATGCCCACCGTTTTTAGGATCAGACCCAGAACGTGATCATCATCAGCGGCGGCAGACGCCTCTTCGGCCATTGCACACTACTAAGCTATACAGGGGAGTGAGGCAACGCCACTGGGGCAAATGGGTGGCTGAGATTCGTCTTCCTAACAGTAGAAATCGCCTCTGGTTAGGCACATTTGACACTGCAGAAGATGCTGCTTTGGCTTATGATCGTGAGGCCTTTAAGCTCAGAGGAGAGAATGCTAGGCTCAATTTCCCCGATCTCTTTCTCAATAAAGCTCCCCATTCAACTGCTTCTTCCTCCTCGTCCTCAAAGCAGCCTGAACCAGAAGAGAATCACGAGGTTCAGGAAACTGCTAGAGGTAATACAGCAGAGGGAGGTCTTTCAGAGGCAGAGAAAGTGGGTTTGGGAGACATGGAGGCTTGGTACAACACGATTCCACAAGGCTGGGGACCCGAGAGCGCTGTGTGGGATGATTTAGACAGCACCAACCATCTTCTGTTTCAGTCACAGTTTCCTTTTGTGAATCCAAACCAGCAAGACTTCGATGATGCTAATAATGCTGAGAGACAAGAAGACAAGACAGGACCAGATTATGCCTCCGCTTCCTCCTCTGCTTGTCTCATGAAACCTTTCTCCTGCAGGGATTAA 939 0.4856 MDRFTNGVDGTQMGEIRDSSFQRQAWKSVYDEAHKSDRPLKRICSPERQILCHPSVSLTLPPPPSSSSSSITFPFALDESPYQSTATTYQPLKSFACPPFLGSDPERDHHQRRQTPLRPLHTTKLYRGVRQRHWGKWVAEIRLPNSRNRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPDLFLNKAPHSTASSSSSSKQPEPEENHEVQETARGNTAEGGLSEAEKVGLGDMEAWYNTIPQGWGPESAVWDDLDSTNHLLFQSQFPFVNPNQQDFDDANNAERQEDKTGPDYASASSSACLMKPFSCRD 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4048g00017 312 MobiDBLite consensus disorder prediction 268 300 - -
Pral4048g00017 312 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Pral4048g00017 312 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Pral4048g00017 312 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Pral4048g00017 312 Gene3D AP2/ERF domain 125 183 IPR036955 GO:0003700|GO:0006355
Pral4048g00017 312 Pfam AP2 domain 126 174 IPR001471 GO:0003700|GO:0006355
Pral4048g00017 312 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Pral4048g00017 312 MobiDBLite consensus disorder prediction 189 224 - -
Pral4048g00017 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 19 256 - -
Pral4048g00017 312 CDD AP2 124 184 IPR001471 GO:0003700|GO:0006355
Pral4048g00017 312 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Pral4048g00017 312 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4048g00017 Pral-Chr4048 64823 66365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4048g00017 114 257 AP2-EREBP Transcription Factor Family AT4G28140 57.931 3.42e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral4048g00017 AP2 5.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4048g00017 - - pcin:129312494 377.096