Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4047g00055 ATGGGCTGCATATGTTCCAAGACATCAGCTGTGGAAGACAGCCGAGAAGACTTGACGAGGAAATCATTATCTAGCAAGAGAGGGTCAGAGCTGCGTGTTTCAAGGTTGAATTCCTCCAAAAGAAATGAGGGTGTTTGGGCAACTGATAAATTAGTTGGAAATGATGTGAAGATTTCATTGATTGACAAGAAAACCAATGGCTCATTTCAGTTGTATGATGATCGAATGGGGAATAAGGAAATAGAGAAGCCTGAATTAACTGTCCTTAACAATCCCGGTCTTGGAAAGGTTCCAAAGGCTGCAGAAGGAGAGCAGGTTGCAGCAGGATGGCCGAATTGGCTTTCTTCTGTGGCTGGTGAAGCTATCAAGGGATGGATACCTCGGAGCGCCAATACTTTTGAGAAGTTAAATAAAATTGGACAAGGAACTTACAGTACTGTTTATAAAGCACGTGATTTGACTCATCAAAAGATTGTTGCTTTGAAGAGAGTTCGGTTTGATAATCTTGATCCTGAGAGTGTAAAGTTTATGGCAAGGGAAATCCTCCTTCTACGCAGACTCGACCATCCAAATATTATCAAGTTGGAAGGCTTGATAACATCTCAGACCTCTCGCAGCTTGTACCTCATTTTTGAGTATATGGAGCATGACCTTTCTGGACTAGCATCACGTCCTGGCATTAAGTTTTCTGAACCACAGGTCAAGTGCTACATGCAACAACTTCTTAGTGGATTGGATCATTGTCATAGTCGTGGTGTCCTCCACCGTGACATAAAGGGCTCAAACCTTCTCATTGACAACAATGGCATCTTAAAAATTGCAGATTTTGGGTTGGCAAGTTTCTTTGATCCCAATCATAGTGTTCCATTAACCAGTCGAGTAGTTACTCTCTGGTATAGACCACCGGAACTTTTACTTGGAGCATCTCATTATGGAGTTGCGGTAGATTTGTGGAGCACTGGTTGCATACTTGGGGAACTATATACTGGCAGGCCTATATTGCCAGGAAAAACTGAGGTTGAGCAACTGCACAGGATTTTCAAGCTTTGTGGATCACCATCTGAGGACTATTGGCTTAAACAACGATTGCCACATGCTGCAGTATTCAGGCCTCCACATCGGTACAGACGGTGTATTGCAGAAACATTTAAAGAATATCCATCTGCTTCAGTGAGGCTCATAGAGACACTACTTTCTGTAGATCCTGCACAACGAGGGACCGCAGCAGGTGCCCTAAAAAGTGAGTTCTTCACTACTGAGCCCTTTGCTTGTGATCCATCAAGTTTACCAAAGTATCCTCCCAGCAAAGAGATTGATTCCAAATTACGGGATGAAGAAGCCAGAAGGCAAGGAGCTATGGGAGGAAGGGAGCAGAAAGTTGGCTCAGGAGTTAGAAAAGAAAAGGAACCTGGGTTAACTGTTTCATCAAAGCAATATGTTGACCCCCGTATATCAACGCAGGGACAACGTTCCAATTCAAAGAGCCGAAGTGAAGTGTTTAACCCCCACAGAGAACCTGTTTCTGGATTTTTGGTTTATCCCCCCCAAAAACAGTCACATGTTAAAGAAATGGAAAATAATTTCAGTGGGCATCTTTATAAGAGGCCTTCACATTCAGGTCCACTGGTTCCGGGTGTTCAATTAGCAAGGGGTGGAAAGGAATTTGATGAAGGGCCTCTTGGTTCGAACAGAGTCAACTTGGCCAAACTATCTGGCTTAGTTGCCTCGAGGACTTCATCATCCGAAGATCAGGAGGAAAAACCAATTTCCATGCTGCCTAGAAAAACAATTGAAGTTAAAAAATCCGTGGAGTCAAATAATGTATCAGAGTCAAGAAGGCATGATAGGAAACGCCAGTCACCACGAATTGCGGATCTCGGTCAAGTAGAAAATGCAAGAGGCTCCACTCAAGAATTGACTCCGGGAGGCCGTGGCTACATGGAAAACAAGATCTATCTCTCTGGTCCATTGCTAGCTTCTGCAAACAACATGGATCAGATGCTTAAAGAGCATGATCGAAAGATCCAAGAATTTTCAAGACGAGCACGAATTGACAAGTCAAGAGGTGGGAAAATTCGTGCTTTGAGAAAGTAG 2094 0.4351 MGCICSKTSAVEDSREDLTRKSLSSKRGSELRVSRLNSSKRNEGVWATDKLVGNDVKISLIDKKTNGSFQLYDDRMGNKEIEKPELTVLNNPGLGKVPKAAEGEQVAAGWPNWLSSVAGEAIKGWIPRSANTFEKLNKIGQGTYSTVYKARDLTHQKIVALKRVRFDNLDPESVKFMAREILLLRRLDHPNIIKLEGLITSQTSRSLYLIFEYMEHDLSGLASRPGIKFSEPQVKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPNHSVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKQRLPHAAVFRPPHRYRRCIAETFKEYPSASVRLIETLLSVDPAQRGTAAGALKSEFFTTEPFACDPSSLPKYPPSKEIDSKLRDEEARRQGAMGGREQKVGSGVRKEKEPGLTVSSKQYVDPRISTQGQRSNSKSRSEVFNPHREPVSGFLVYPPQKQSHVKEMENNFSGHLYKRPSHSGPLVPGVQLARGGKEFDEGPLGSNRVNLAKLSGLVASRTSSSEDQEEKPISMLPRKTIEVKKSVESNNVSESRRHDRKRQSPRIADLGQVENARGSTQELTPGGRGYMENKIYLSGPLLASANNMDQMLKEHDRKIQEFSRRARIDKSRGGKIRALRK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4047g00055 697 SMART serkin_6 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4047g00055 697 MobiDBLite consensus disorder prediction 436 453 - -
Pral4047g00055 697 FunFam probable serine/threonine-protein kinase At1g54610 120 215 - -
Pral4047g00055 697 Gene3D Phosphorylase Kinase; domain 1 120 215 - -
Pral4047g00055 697 MobiDBLite consensus disorder prediction 601 644 - -
Pral4047g00055 697 MobiDBLite consensus disorder prediction 427 476 - -
Pral4047g00055 697 ProSiteProfiles Protein kinase domain profile. 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4047g00055 697 Gene3D Transferase(Phosphotransferase) domain 1 216 455 - -
Pral4047g00055 697 Coils Coil 661 681 - -
Pral4047g00055 697 MobiDBLite consensus disorder prediction 575 594 - -
Pral4047g00055 697 Pfam Protein kinase domain 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4047g00055 697 MobiDBLite consensus disorder prediction 601 623 - -
Pral4047g00055 697 FunFam probable serine/threonine-protein kinase At1g54610 216 457 - -
Pral4047g00055 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Pral4047g00055 697 PANTHER CELL DIVISION PROTEIN KINASE 131 422 - -
Pral4047g00055 697 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Pral4047g00055 697 MobiDBLite consensus disorder prediction 580 594 - -
Pral4047g00055 697 MobiDBLite consensus disorder prediction 678 697 - -
Pral4047g00055 697 SUPERFAMILY Protein kinase-like (PK-like) 126 423 IPR011009 -
Pral4047g00055 697 CDD STKc_CDK9_like 133 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4047g00055 Pral-Chr4047 378040 383983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4047g00055 125 482 Core Cell Cycle Gene Families AT5G10270 45.989 2.14e-112 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pral4047g00055 Pkinase 1.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4047g00055 - - gmx:100814156 992.26