Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4047g00052 ATGGAAGCTCAAGGAAGCCAGAATCATCCTCCCCCTCCTCCTCCTTCTTCCACCAAAGTCGAAAGAAAAATCATAGAGAAAAACAGAAGAAACCAGATGAAGATTCTCTACTCTAAGCTCAATTCTCTCCTGCCTGACCATAACCCAAAGGAAATACTGCCGCTTCCTGATCAAATAGATCAGGCCATAGATTACATAAAGAGTTTGGAGGCGAAGGTGAAGATGGCTCAAGAGAAGAGAGAAGGCTTGACGGGAAGGAAAAGGCCATTTGCTGCGAGCAGCTCCAGTAGTGTTATTGAGACTAAGAAAACTGTGGCAAGATCACCAGAAATCGAGATTCGTGAAGTGGGTTCGTCTCTAGAAATTGCTCTGATCACGGGATTAGATAACCAGTTCGTTTTCTATGAGATCGTTCGTATACTTCACGAAGAAAACATAGAGGTTGTGAGTGCTAACTCCTCGCTTGTTGGCGACTCAATGCACCACGTAGTGCATGCAGAGATTGGGCAATCGTCGTATCAATTCGGAGCAACCAAGGTAAGCGAGAGGATAAAAAGATTTGTGTACGGGTCATCAAGTGATGTGGAAATAAACCCTGAGTGGTGGGATTTTGAGAACATTGCTTCTGAACCCTGGAACTTCTAA 645 0.445 MEAQGSQNHPPPPPPSSTKVERKIIEKNRRNQMKILYSKLNSLLPDHNPKEILPLPDQIDQAIDYIKSLEAKVKMAQEKREGLTGRKRPFAASSSSSVIETKKTVARSPEIEIREVGSSLEIALITGLDNQFVFYEIVRILHEENIEVVSANSSLVGDSMHHVVHAEIGQSSYQFGATKVSERIKRFVYGSSSDVEINPEWWDFENIASEPWNF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4047g00052 214 Gene3D - 15 96 IPR036638 GO:0046983
Pral4047g00052 214 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 16 189 - -
Pral4047g00052 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
Pral4047g00052 214 MobiDBLite consensus disorder prediction 1 20 - -
Pral4047g00052 214 Pfam Helix-loop-helix DNA-binding domain 19 70 IPR011598 GO:0046983
Pral4047g00052 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 88 IPR036638 GO:0046983
Pral4047g00052 214 Coils Coil 59 86 - -
Pral4047g00052 214 FunFam Transcription factor bHLH162 12 95 - -
Pral4047g00052 214 SMART finulus 23 75 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4047g00052 Pral-Chr4047 339608 340706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4047g00052 17 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.459 6.10e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4047g00052 HLH 4.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4047g00052 - - gmx:100817883 261.922