Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4047g00049 ATGGTATGCTTGAGATTTGACATGGTTACCGGCAGAAGATTGGGTTTCTGGTTGAGTAAGAGGAGGGGACTAGGGTTTCTATTGCAGGTTGCGTTTTGGTGGTGGGCTGTCCTGTTGTTTATTCGTCCCGTGGCGGGTCTGAGACCGCTAAGGGAGAGGACTCGGTCGTGGGGCGATGAGTGGCTAATCACAAGAAAAGTGGAGAGTGAGCTCGGTCCATTTTCACAATGGAACATAACAGGAACATACAAAGGAACATGGAAATTTTTAGATACCACCAATGGCTCTTCCAGATTTCCTGACATCAGAAATACAAATGGCAATACTGTAATTGAATTAGCTAGTACACCCACAAAAATACATGGTGTGCATTATGTGCAGGGAGTAGTTATATTCCATGATGTGTTTGACACTGAGTTCAATGTCGGTGGAGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCATTTAGACAGCTTCGAATGGTTGCCAACAGTGGAAAAGAGGGAGAGTTAAATCAGGGTGAAGATAATATTTTATCTAATCCATATCATCTGCTTGGAGTCTTCTCATCCCAAGTATTCCAAGAATCTTCACGAGATAAGATGTGGAGAAGAAAACATTCTTCAATATATGACGTGGAGAAACGTTGCAATTTTGAAATTGCCGCACAAATTTCAAGACAGTCATCATCAAAAAATGATGGGGATCAGGATCTTTTCCATCTTGAAGGGCTAACAGAGAGTCCCTCAACTGATGATGATGGGGACTGCTTCTCACCTTTACTACTAAATGCAACTTCTGTTAACATTGAGGTCTATTATAGCAAGGCAGTGAACTACACATTGATGGTTACCTTTGTGTCTTTCTTGCAAGTTCTCTTATTGATTCGACAAATGGAGCATAGTAACACGCAATCTGGAGCTGCCAAGGTTTCAATTTTTATGATTGGCCAACAGGCAATCATGGATGCTTATCTTTGCCTCTTACATCTGACTGCTGGGATACTAGTTGAGTCTCTGTTCAATGCTTTTGCAACTGCTGCTTTTTTCAAGTTTGTGGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCCATATGGAAGGCAAGTAGGCCTTTCAACAATGGGGAAGGTTGGGAAACAATGAGACGGGAGCTTTCAGTTTTATACAGTCGTTTCTATGGGATCCTGTTGGGTGGCATTCTGCTCATGTATGAGTTTCATAGTTATTTGAGACCTATCATTCTTCTTATGTACTCCTTTTGGATACCTCAAATTATCACCAATGTTGTTCGTGATTCACGCAAACCATTGCATCCTCACTATATCATAGGGACAACCATCACTCGGCTAGCAATCCCATTATATATTTTCGGTTGCCCTAACAATTTCATGCGCATCGAACCACACAAGAATTGGTGTATTTGTTTGGTCGTATTCGTTGGGTTTCAAGCCGGGGCTCTTTTGCTTCAGCACTACCTTGGATCCCGCTGGTTCATTCCTCGCCAGATCCTACCCGAGAAATACAGCTATTATAGGAGGTTTGATCAAGACAGAAGTCATGCTTCAGACTGTGTTATTTGCATGACGGCCATTGATTTTTCTCAGCGATCCAATGAATGCATGGTAACACCTTGCGATCATTTCTTCCACTCTGGTTGCTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCGACTTGCCGCCGGCCCCTGCCTCCTGCCTAG 1731 0.4263 MVCLRFDMVTGRRLGFWLSKRRGLGFLLQVAFWWWAVLLFIRPVAGLRPLRERTRSWGDEWLITRKVESELGPFSQWNITGTYKGTWKFLDTTNGSSRFPDIRNTNGNTVIELASTPTKIHGVHYVQGVVIFHDVFDTEFNVGGAQIRVEGVYIWPFRQLRMVANSGKEGELNQGEDNILSNPYHLLGVFSSQVFQESSRDKMWRRKHSSIYDVEKRCNFEIAAQISRQSSSKNDGDQDLFHLEGLTESPSTDDDGDCFSPLLLNATSVNIEVYYSKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIFMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPFNNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHSYLRPIILLMYSFWIPQIITNVVRDSRKPLHPHYIIGTTITRLAIPLYIFGCPNNFMRIEPHKNWCICLVVFVGFQAGALLLQHYLGSRWFIPRQILPEKYSYYRRFDQDRSHASDCVICMTAIDFSQRSNECMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4047g00049 576 CDD RING-H2_TUL1-like 521 575 - -
Pral4047g00049 576 ProSiteProfiles Zinc finger RING-type profile. 526 570 IPR001841 -
Pral4047g00049 576 SMART ring_2 526 569 IPR001841 -
Pral4047g00049 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 576 IPR013083 -
Pral4047g00049 576 SMART ringv_2 525 570 IPR011016 GO:0008270
Pral4047g00049 576 SUPERFAMILY RING/U-box 512 575 - -
Pral4047g00049 576 PANTHER RING ZINC FINGER PROTEIN 136 575 - -
Pral4047g00049 576 Pfam Ring finger domain 525 570 IPR001841 -
Pral4047g00049 576 FunFam E3 ubiquitin-protein ligase, putative 512 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4047g00049 Pral-Chr4047 303037 312554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4047g00049 517 574 C3H Transcription Factor Family AT1G53010 36.667 5.54e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4047g00049 K23788 - gmx:100780140 1004.2