Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4047g00047 ATGGATGCTGCAAAAATAGACGGCTTCATGCCAAAAATGGCCAACCAGAAGCCGCCGAAGAGGGAGGCGACGGAGGAATACGCCGGAAAAAATGGCAATGGGAAGAAAGGATCCGGTGCTTCACGGTGCTGCCAAGCGGATAACTGCACCGCCGATCTCAGTGATGAGAAGTACTATCACAGGAGGCACAAGGTGTGTGAGGATCATGCCAAGGCTCAGGCAGTGCTTGTGTGTGGGATACGACAGCGTTTTTGTCAGCAATGTAGCAGGTTTCATGAGTTAGCTGAATTTGATGATGCTAAAAGGAGTTGTCGCCAGCGTTTGGCTGGACACAACGAACGGCGAAGAAAGAACTGCGAGTCCCAGTCGGAAGGCTGGAGCTGCAAAGGGTCAGGCAAGCAGTTGAAGGACAAAACTCGTGAGCAGAGTGATGATAGAGGGAGAATTCAGAACAGCACCCAAGATAATGCTACTTATAAGCATTTCCAGATGAGATAA 498 0.5 MDAAKIDGFMPKMANQKPPKREATEEYAGKNGNGKKGSGASRCCQADNCTADLSDEKYYHRRHKVCEDHAKAQAVLVCGIRQRFCQQCSRFHELAEFDDAKRSCRQRLAGHNERRRKNCESQSEGWSCKGSGKQLKDKTREQSDDRGRIQNSTQDNATYKHFQMR 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4047g00047 165 ProSiteProfiles Zinc finger SBP-type profile. 41 118 IPR004333 GO:0003677
Pral4047g00047 165 Pfam SBP domain 44 117 IPR004333 GO:0003677
Pral4047g00047 165 Gene3D - 34 105 IPR036893 GO:0003677|GO:0005634
Pral4047g00047 165 MobiDBLite consensus disorder prediction 131 148 - -
Pral4047g00047 165 MobiDBLite consensus disorder prediction 1 38 - -
Pral4047g00047 165 MobiDBLite consensus disorder prediction 122 165 - -
Pral4047g00047 165 SUPERFAMILY SBT domain 43 121 IPR036893 GO:0003677|GO:0005634
Pral4047g00047 165 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 131 IPR044817 GO:0003677
Pral4047g00047 165 MobiDBLite consensus disorder prediction 149 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4047g00047 Pral-Chr4047 296001 297838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4047g00047 41 165 SBP-box Gene Family AT3G15270 55.118 2.54e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4047g00047 SBP 2.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4047g00047 - - jre:108986645 203.756