Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4047g00046 ATGGATGCTGCAAAAATAGACGGCTTCATGCCAAAAATGGCCAACCAGAAGCCGCCGAAGAGGGAGGCGACGGAGGAATACGCCGGAAAAAATGGCAATGGGAAGAAAGGATCCGGTGCTTCACGGTGCTGCCAAGCGGATAACTGCACCGCCGATCTCAGTGATGAGAAGTACTATCACAGGAGGCACAAGGTGTGTGAGGATCATGCCAAGGCTCAGGCAGTGCTTGTGTGTGGGATACGACAGCGTTTTTGTCAGCAATGTAGCAGGTTTGGGAGGTTTCATGAGTTAGCTGAATTTGATGATGCTAAAAGGAGTTGTCGCCAGCGTTTGGCTGGACACAACGAACGGCGAAGAAAGAACTGCGAGTCCCAGTCGGAAGGCTGGAGCTGCAAAGGGTCAGGCAAGCAGTTGAAGGACAAAACTCGTGAGCAGAGTGATGATAGAGGGAGAATTCAGAACAGCACCCAAGATAATGCTACTTATAAGCATTTCCAGATGAGATAA 507 0.501 MDAAKIDGFMPKMANQKPPKREATEEYAGKNGNGKKGSGASRCCQADNCTADLSDEKYYHRRHKVCEDHAKAQAVLVCGIRQRFCQQCSRFGRFHELAEFDDAKRSCRQRLAGHNERRRKNCESQSEGWSCKGSGKQLKDKTREQSDDRGRIQNSTQDNATYKHFQMR 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4047g00046 168 MobiDBLite consensus disorder prediction 125 168 - -
Pral4047g00046 168 Gene3D - 34 108 IPR036893 GO:0003677|GO:0005634
Pral4047g00046 168 Pfam SBP domain 44 120 IPR004333 GO:0003677
Pral4047g00046 168 SUPERFAMILY SBT domain 43 124 IPR036893 GO:0003677|GO:0005634
Pral4047g00046 168 MobiDBLite consensus disorder prediction 1 38 - -
Pral4047g00046 168 MobiDBLite consensus disorder prediction 152 168 - -
Pral4047g00046 168 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 134 IPR044817 GO:0003677
Pral4047g00046 168 MobiDBLite consensus disorder prediction 134 151 - -
Pral4047g00046 168 ProSiteProfiles Zinc finger SBP-type profile. 41 121 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4047g00046 Pral-Chr4047 295999 297838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4047g00046 40 168 SBP-box Gene Family AT3G15270 53.435 5.10e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4047g00046 SBP 4.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4047g00046 - - jre:108986645 198.364