Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4047g00037 ATGCCTGCGCAGAAGCGGTCTTTGCCAGAGTCTACGGACGATGGAGAGGTCTCAGAACTTTACAACCACCGCCATGCGAAGCAATCTCATCGGGACCGAGAGCTACAAGGCGAGGAAAAGAGGGCAGAGGAAGATGAGCAAGGGGAGCTTGGTGAAGGGGAAGAAGAAGGACAACAGAACGAGCAAGAGCAGGATAAGGAGGAGAAAGCAGAGGATTCTGAGGAAAGCCCATCTTCTGAAACCGAAGAGAAACCTGAATTTGTGTTTGTCGAACTTCTGGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTCGGTATTATCAAGAAAACACGGACCGTCATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGAGACTAGGGAATAATGAATGCCCAGCTTGCCGCACACATTGTGCCAGTCGTCGTTCCTTGAGAGATGATCCAAACTATGATTCTCTAATTGCTGCTCTATATCCAGACATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTGGTTCAGCGGCAATCTGAAGCACTGGTTAAGAGGCGTAATAAGGATACACCACCAGGTGCATTTGTCACCAGGTCACAGCGCAATAATAGGAATGTTGGTAGGAGACAAAACCATGGAATTGATCAAGGATCAGAAGACAATGAAGAGGAAAATGAAAATAATGGAGAGAAAGACTCATCCTCCACTGATGAGCGGAGTGCAGAACCAAAGAAAAAGCGAAAGAGAGGGACAAGAGTTCGTCCCTCCCAACCTTCCTCATCAATGGCAAGCCCTGATGGTGGCTTTATAGAAAGTGATGTTGATATAATCAGAGAAAATCGAGGAATTTCTTCAAGGCATCTGTCAAAACCTCAGAAGCTTACTTGGGGAAGGGGTGGTTTTAGGAGCCACACTCGACATGGCAGTGGCAGCGGCAGCTCTAGCAAGAATGCTCGCGGTAGTCGCGTGTCTAAGTTTGTTGATTATTTAAGAAGCTTAGATGAAAACACAGATGAGTATGACATCCATCTTATGCTTGTTTCCTTGGACAAAGAAAGTATACCAAGTTTGCAGCAGCCACACCTTTGCTGTCGGCCAACTCTGTCCGTCAAGCACCTGTGCGAATATATTGCTCAGCAGACCCTATTGCCAGCTGAAGAAATTGAGATATTGGCCGTTAAAGGATGCTGCAGCATCATCTGTGATAAGTCAGCCGATGAGGCTTCAACCTTGCACAATGACGAGCTCACCACACTGGTTTTAGATCCCTGCAAAGATGAACTGGAAATTTTGCAAGTACATGAAACTTTGGCGGGGCTCAAGTCCAAATTCACGTCTAAAATGGAGCACCTGATTCTGGCATTTAGGAGGAAGGAGAAAATATAG 1449 0.4582 MPAQKRSLPESTDDGEVSELYNHRHAKQSHRDRELQGEEKRAEEDEQGELGEGEEEGQQNEQEQDKEEKAEDSEESPSSETEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDSLIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRNKDTPPGAFVTRSQRNNRNVGRRQNHGIDQGSEDNEEENENNGEKDSSSTDERSAEPKKKRKRGTRVRPSQPSSSMASPDGGFIESDVDIIRENRGISSRHLSKPQKLTWGRGGFRSHTRHGSGSGSSSKNARGSRVSKFVDYLRSLDENTDEYDIHLMLVSLDKESIPSLQQPHLCCRPTLSVKHLCEYIAQQTLLPAEEIEILAVKGCCSIICDKSADEASTLHNDELTTLVLDPCKDELEILQVHETLAGLKSKFTSKMEHLILAFRRKEKI 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4047g00037 482 CDD RING-HC_RING1-like 98 163 - -
Pral4047g00037 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 170 IPR013083 -
Pral4047g00037 482 ProSitePatterns Zinc finger RING-type signature. 117 126 IPR017907 -
Pral4047g00037 482 MobiDBLite consensus disorder prediction 214 233 - -
Pral4047g00037 482 ProSiteProfiles Zinc finger RING-type profile. 101 141 IPR001841 -
Pral4047g00037 482 MobiDBLite consensus disorder prediction 9 47 - -
Pral4047g00037 482 MobiDBLite consensus disorder prediction 249 265 - -
Pral4047g00037 482 SUPERFAMILY RING/U-box 88 155 - -
Pral4047g00037 482 MobiDBLite consensus disorder prediction 293 307 - -
Pral4047g00037 482 SMART ring_2 101 140 IPR001841 -
Pral4047g00037 482 MobiDBLite consensus disorder prediction 1 85 - -
Pral4047g00037 482 Pfam Zinc finger, C3HC4 type (RING finger) 100 140 - -
Pral4047g00037 482 PANTHER OS11G0578200 PROTEIN 1 481 IPR044592 -
Pral4047g00037 482 MobiDBLite consensus disorder prediction 200 340 - -
Pral4047g00037 482 MobiDBLite consensus disorder prediction 48 79 - -
Pral4047g00037 482 Coils Coil 167 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4047g00037 Pral-Chr4047 278048 285472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4047g00037 94 164 C3H Transcription Factor Family AT3G23060 35.135 2.82e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4047g00037 K10695 - gmx:100776547 571.622