Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4047g00033 ATGAGCAGTTCTGAATGCGCCGAGCATAAGTTCCTTGAAGATACCCACCAGCTCCTCTTCCCGAAGAAATCAATGATCAGGGACATTGACAACTACATGCCACCCAGGAAGCTCCTCACTCGCCTTGGCGGCGCCAAAACTGCTATCCACGACGTCGCCGATATGTTCACTGACTCCCCGCGGTTTTCTTCTTCCGATGAGACGCTTCTGCGGAAGTTCCTTCCCCACAACAACCTCGCCACCGAATCTGACGACGACGATCCCAACCCGTACTCCTCGGAGCACTTCCGAATGTACGAGTTCAAGGTCCGCCGGTGCAATCGCAGCCGAAGCCACGACTGGACTGACTGCCCCTTCGCTCATCCCGGGGAAAAAGCTCGCCGGCGGGATCCCAGAAAGTACCACTACTCCGGTACTATCTGCTCCGAGTACCGCCGCAGCGGCGCATGCAGACGCGGCGATAGTTGCGAGTATGCACACGGGGTGTTTGAATGTTGGCTTCACCCAGCGAGGTACAGGACGGAGGCTTGTAAGGATGGTAAGAATTGTAAGCGAAAGGTATGCTTCTTTGCTCACACACCTCGCCAACTGAGAATTTTGCCGGTTAATTGCTCTTCCTCGCCTGATCAAATCTCAGACAAGAAGAACAAATTCTTAAAACACTCATTGGGATCAAACAGTTGCTGTATGTTTTGTCATCGCTCTGCTAACGCTAATTCTTCCCCGACTTCCACTCTCTTTGGAATGTCCCATTTTTCACCACCGTTATCGCCGTCGTCTCCCCCTATGTCGCCGATCAAAACAGGAACCTCTGCAAATGGTTTATCGCCAATATCTCGTTATAGTGAAAGCATTAAGGGATCTGAGGCTTATAATAATCGGGGTATGGTCATGACCTACAGGGATGCTCTCACCGAGTTGGTGAGCTCCTTGGAGGTTCTGAATTTCAGTGAAGCTTCTTCATCACCTGAAATCTCTGCCACTGCCACTAATATTAAGTCCCCAGATCTGCGCTGGCTTGACGTTTCTTCCTTTAACTGTGATGATCGGTTCATTCCTTCACCTTCTACTTCTTTCAATTGTGAAGATCAGCAACAGATGATTCTTTCAGCGTCTTCTCAAATTTCCCAGAACCCAACAGCTCTATCATCTGCCTCAAGGAAATCTCCAGCTGGAAAAATTTTCAACGAAAGCAGAATCGTTGGTAATGATAACAACGGTTCTTCATGTGCAACTCCAGATCTGGGTTGGGTCAATGACCTGCTGATATAG 1272 0.4945 MSSSECAEHKFLEDTHQLLFPKKSMIRDIDNYMPPRKLLTRLGGAKTAIHDVADMFTDSPRFSSSDETLLRKFLPHNNLATESDDDDPNPYSSEHFRMYEFKVRRCNRSRSHDWTDCPFAHPGEKARRRDPRKYHYSGTICSEYRRSGACRRGDSCEYAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNCSSSPDQISDKKNKFLKHSLGSNSCCMFCHRSANANSSPTSTLFGMSHFSPPLSPSSPPMSPIKTGTSANGLSPISRYSESIKGSEAYNNRGMVMTYRDALTELVSSLEVLNFSEASSSPEISATATNIKSPDLRWLDVSSFNCDDRFIPSPSTSFNCEDQQQMILSASSQISQNPTALSSASRKSPAGKIFNESRIVGNDNNGSSCATPDLGWVNDLLI 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4047g00033 423 PANTHER UNKEMPT FAMILY MEMBER 61 422 IPR045234 -
Pral4047g00033 423 SMART c3hfinal6 135 162 IPR000571 GO:0046872
Pral4047g00033 423 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Pral4047g00033 423 Gene3D - 130 209 - -
Pral4047g00033 423 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Pral4047g00033 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 161 IPR000571 GO:0046872
Pral4047g00033 423 SUPERFAMILY CCCH zinc finger 134 165 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4047g00033 Pral-Chr4047 254558 256072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4047g00033 75 198 C2H2 Transcription Factor Family AT5G07500 62.500 3.49e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4047g00033 zf-CCCH 9.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4047g00033 K23047 - qsa:O6P43_028831 443.351