Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4047g00030 ATGCCAAGCACCACAATGGCTGTGAAGGAAAAGCTCGGTATCAAGCATAACAAGCCAAACATTGCCAAGGAGGTTCACTACAGGGGCGTCCGCAAGAGACCGTGGGGCCGTTATGCCGCCGAAATACGAGATCCCGGCAAGAAGAGTCGCGTTTGGCTGGGGACGTTCGACACCGCGGAGGAAGCCGCCAGAGCCTACGACGCCGCCGCTCGGCAATTCCGTGGCCCCAAGGCTAAGACCAACTTTCCTCTGCCCAACGACGGCGGCCTCAATGGAAATAACCGGAGTCCAAGCGAGACTAGCACCGTGGAGTCATCCAGCCGAGATGGTTCGGAGCGTGAGATAACGCGCCGCTGCGACCTTGGTGTTGTCGTGGATCGGTTCCCGTTTCTTCCGATACAGCCACACCAGATGGCTTTCGGTTGCGGCGGCGGCGGCGATGGTAGTGGTGGTGTGGCGAGTTTAGTGCCAGCTATGCGTCCGGTTTTCGTTTTTGAACCGGCTTCATGTGGTAGGGCCGAGTTTGTGAGTCAGCCATATCCGTTGCCGGTCGCCGTCAAGAGCACAATGGGAAGTACGGCTCCGAGTGACTCCGATTCGTCGTCCGTCGTTGATTGTCAGCCTAAGAAAGCTATCAACCTTGATCTTAACCTGGCTCCTCCGTCTGAGGATTGA 675 0.5748 MPSTTMAVKEKLGIKHNKPNIAKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPLPNDGGLNGNNRSPSETSTVESSSRDGSEREITRRCDLGVVVDRFPFLPIQPHQMAFGCGGGGDGSGGVASLVPAMRPVFVFEPASCGRAEFVSQPYPLPVAVKSTMGSTAPSDSDSSSVVDCQPKKAINLDLNLAPPSED 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4047g00030 224 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Pral4047g00030 224 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Pral4047g00030 224 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Pral4047g00030 224 MobiDBLite consensus disorder prediction 76 114 - -
Pral4047g00030 224 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Pral4047g00030 224 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Pral4047g00030 224 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Pral4047g00030 224 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Pral4047g00030 224 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 182 - -
Pral4047g00030 224 CDD AP2 26 83 IPR001471 GO:0003700|GO:0006355
Pral4047g00030 224 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Pral4047g00030 224 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4047g00030 Pral-Chr4047 226846 227857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4047g00030 5 224 AP2-EREBP Transcription Factor Family AT5G44210 45.259 5.65e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral4047g00030 AP2 9.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4047g00030 K09286 - qsa:O6P43_000758 231.106