Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4047g00022 ATGGCTTCGTTGTTCAAGGATCTATCTAAGCTTTCAGCCTATCGAGACAGAAAATTTCCGGGAACGCAAGAGGAATTTGAGCAAGCGCTCCTGTCTTCAACAACTGTTTATGTGGGGAATATGTCGTTTTACACAACAGAAGAGCAAGTTTATGAACTTTTTTCTCGAGCTGGAGAAATTAAGAAAATTATCATGGGATTGGATAAAAACACGAAAACTCCTTGTGGCTTTTGTTTTGTTTTATACTACTCTCGAGAAGATACTGAAGACGCTGTCAAATACATAAGTGGGACAATACTTGATGATCGTCCTATTCGTGTAGACTTTGACTGGGGATTCCAGGATGGAAGACAATGGGGTCGTGGTCGTAGTGGTGGTCAGGTGCGTGATGAATATCGGACTGATTATGATCCTGGTAGAGGTGGTTATGGAAAGTTGGTTCAGAAAGAGTTGGAGGCACAAAGACAGCTCGTTGATTATGGTGCTGGTTCTTTGGGCTCTTTTCCACCAGTTTTGCCACCATCCTATGGCAGACATGGTGGTTCTCATCGGTATGGCAGAGATTACCATAAGAAGAGGCACAGAGATGATGATCGCCACGCCTACGAGCCCTCAAAAAGGTCATCGGATCATGAATCTCGGAGGAACTCTGATCATGACTCTAGACCGGAAAAAAATCCACGATTTCGTGAGAGCGGTGATTCTGATGATGATGAGGAAGATGATCGAAAAAGAAGATCTTAG 744 0.4355 MASLFKDLSKLSAYRDRKFPGTQEEFEQALLSSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGAGSLGSFPPVLPPSYGRHGGSHRYGRDYHKKRHRDDDRHAYEPSKRSSDHESRRNSDHDSRPEKNPRFRESGDSDDDEEDDRKRRS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4047g00022 247 MobiDBLite consensus disorder prediction 124 138 - -
Pral4047g00022 247 SMART rrm1_1 35 108 IPR000504 GO:0003723
Pral4047g00022 247 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Pral4047g00022 247 CDD RRM_NCBP2 36 113 IPR034148 -
Pral4047g00022 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Pral4047g00022 247 MobiDBLite consensus disorder prediction 191 247 - -
Pral4047g00022 247 MobiDBLite consensus disorder prediction 165 247 - -
Pral4047g00022 247 SUPERFAMILY RNA-binding domain, RBD 26 144 IPR035979 GO:0003676
Pral4047g00022 247 MobiDBLite consensus disorder prediction 120 143 - -
Pral4047g00022 247 Gene3D - 6 150 IPR012677 -
Pral4047g00022 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Pral4047g00022 247 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 154 IPR027157 GO:0000339|GO:0005846|GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4047g00022 Pral-Chr4047 185945 190149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4047g00022 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 4.35e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4047g00022 K12883 - zju:107411315 397.512