Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4047g00017 ATGGGTGTGGATTATTATAAGATCTTGCAAGTTGACAAGAATGCCAAAGACGACGACTTGAAGAAGGCTTACCGGAAGCTTGCCATGAAATGGCATCCTGATAAGAATCCCAATAACAAGAAAGAAGCGGAAGCTAAATTCAAGCAAATATCCGAGGCCTATGACGTTCTCAGTGATCCTCAAAAGAGAGCCATCTATGATCAATATGGCGAAGAAGGTCTGAAGGGTGGGGTTCCTCCTCCTGATGCTGGCGGAGCTGGAGGAGCTTCTTTCTTTTCAACGGGAGAAGGACCGACGTCGTTTCGGTTCAATCCTAGAAACGCCGACGACATTTTTACTGAATTTTTTGGGTTTTCGAGCCCATTTGGAGGCGGCGGTGGCCATGGAGGGATGAGGTCAAGGTTCTCTAGTGGGATCTTTGGTGATGATGTGTTTGGATCATTCGGAGAAGGAAGGGGAGTCCATATGAATCCGGGTGCTCCTCGAAAAGCTCCTCCTATTGAGAACAGATTGCCTTGTAGTCTCGAAGACTTGTATCAAGGAACTACAAAGAAGATGAAGATCTCTAGAGAAATTGCTGATGCTAGTGGCAAAACCATGCCTGTAGAGGAGATCCTAACTATAAATATCAAGCCTGGTTGGAAGAAGGGTACGAAGATAACCTTCCCAGAGAAAGGAAATGAGCAGCCACATGTGACCCCGGCGGACCTTGTTTTTATCATCGATGAGAAGCCTCACAGTGTTTTCACTCGCGATGGAAATGATCTAATTGTGACGCAAAAGATTTCTCTCGCGGAGGCCTTGACCGGTTATACGGTGCAGCTGACTACCTTGGATGGAAGAAACCTGACCATACCAATCAACAGTGTGATTCATCCAAGCTATGAGGAGGTTGTTCCAAGAGAAGGAATGCCACTCCAAAAGGATCCCACGAAGAAGGGAAACTTAAGGATAAAGTTCAACATTAAGTTCCCAACTCGGCTGACCTCAGAACAGAAGGCAGGAATCAGGAAACTCTTGGGTGCCTCACCTTGA 1035 0.4647 MGVDYYKILQVDKNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAIYDQYGEEGLKGGVPPPDAGGAGGASFFSTGEGPTSFRFNPRNADDIFTEFFGFSSPFGGGGGHGGMRSRFSSGIFGDDVFGSFGEGRGVHMNPGAPRKAPPIENRLPCSLEDLYQGTTKKMKISREIADASGKTMPVEEILTINIKPGWKKGTKITFPEKGNEQPHVTPADLVFIIDEKPHSVFTRDGNDLIVTQKISLAEALTGYTVQLTTLDGRNLTIPINSVIHPSYEEVVPREGMPLQKDPTKKGNLRIKFNIKFPTRLTSEQKAGIRKLLGASP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4047g00017 344 Gene3D DnaJ domain 3 126 IPR036869 -
Pral4047g00017 344 Gene3D - 246 326 - -
Pral4047g00017 344 CDD DnaJ 4 59 IPR001623 -
Pral4047g00017 344 SMART dnaj_3 3 62 IPR001623 -
Pral4047g00017 344 Pfam DnaJ domain 4 67 IPR001623 -
Pral4047g00017 344 FunFam Dnaj homolog subfamily b member 163 244 - -
Pral4047g00017 344 FunFam DnaJ subfamily B member 13 3 126 - -
Pral4047g00017 344 PRINTS DnaJ domain signature 42 62 IPR001623 -
Pral4047g00017 344 PRINTS DnaJ domain signature 6 24 IPR001623 -
Pral4047g00017 344 PRINTS DnaJ domain signature 24 39 IPR001623 -
Pral4047g00017 344 PRINTS DnaJ domain signature 62 81 IPR001623 -
Pral4047g00017 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 166 246 IPR008971 GO:0006457|GO:0051082
Pral4047g00017 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 248 334 IPR008971 GO:0006457|GO:0051082
Pral4047g00017 344 SUPERFAMILY Chaperone J-domain 3 125 IPR036869 -
Pral4047g00017 344 CDD DnaJ_C 165 328 - -
Pral4047g00017 344 FunFam DnaJ subfamily B member 13 246 326 - -
Pral4047g00017 344 Pfam DnaJ C terminal domain 167 325 IPR002939 -
Pral4047g00017 344 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Pral4047g00017 344 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 340 - -
Pral4047g00017 344 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Pral4047g00017 344 Gene3D - 166 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4047g00017 Pral-Chr4047 138068 140499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4047g00017 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 6.76e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4047g00017 K09510 - gmx:100778672 539.265