Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4047g00016 ATGGAGGCTTGTTCAGAAGGAGAGCAGAAAAAGCCACCTGAGGGGGAGAATAAGAGCAAGCGCAAAATGAAGACTGCTTCCCAGTTGGAGATTCTGGAGAAAACTTATGCTACCGAACCGTATCCATCCGAGGCACTGCGAGCAGAGCTATCGGCGAAATTGTGTCTTTCAGATCGTCAACTGCAGATGTGGTTTTGTCACCGCAGGTTGAAAGACAGAAAGGCACCAGCAGCGAAGAAGCCTGGAAATGAATCGCCACCTGGAGCGGTGACTCCGGCGCCAGTGGCTGATGGTTTTGAGCAGAAGGCAACGGGTGATGGTGGACATGGGCGTGATTCCATTTCTGGGAAGAGGCGGTACAGTCATATGGATCCACGGCGAGCTATCCCACGACCTTGTATGGCCTTTCCTAGCATTGGAGGGGGATTGCCGGCAATGGAGAGTTACTATGGATCACATCAGTTCAAAGCTGAGCTGAAAGCTATTGCATTTGTGGAAGAACAGTTAGGGGAGCCATTAAGAGAGGACGGGCCAATTTTGGGGATGGAATTTGATCCGTTGCCACCCGGTGCCTTTGGTACACCAATAGGGCCAACTGCAGTGGGGCAGCATAGGCAATCTGGAAGGCCTTTTGAGGCAAAAATTTATGAACGAGTGGACAAGGGTGCTTCAAGGACTCTTCATGAATATAAATTTATTCCAGAGCAGCCAACCGTTAGAAATGAGACATATGACTACGAGAGAGTCACCCCTTCTAACCACTATGGTTCTCTTGATGGAATTCCCCATGCAAGGACTTTATTATCTAGTGGACGACAATTCCTTGATGGGAATGACATTGCTTCCTATGGATATGGATATCAGAATATGTTGCCAGGGTTAAATCTTTTGTCTCAGCAAGGCAGGCAGAATCATCTTTTACCTTCTGCTTCTGGACAGAATGATAACATTCCATGGAAAAACACGTTTGCTGATGTGCCTGCTAACTCTCATATTGGAGCTTACCCTGCAACTAAAATTGACAGCATGTTAACTCCATCTGACCAGAGGGTTATCCATGAGGAGCAAATTTCTCGGTTTCAGAGGAAGCGGAAGAATGAAGAGGCTAGAATGCAGCGGGAACTTGAGGCACAAGAGAAACGAATGAAGAAAGAGCTTGAAAAGCAGGATATTTTAAGGCGAAAGAGAGAAGAGCAGGTAAGGAAAGAGATGGAGAGACATGAACGTGAAAGGCGGAAGGAAGAGGAAAGAATATTGCGTGAAAGACAAAGGGAAGTGGAGAGAAACCAAAGAGAACAGAAGCGTGAACTAGTGCGAAGGGAGAAGATCTTGCAGAAAGAGTCAATCAGAGCTGAGAAAAGGAAACAGAAGGAAGAGGTACGCAAAGAGAAAGAGGCGGCAAGGATCAAAGCAGCCAATGAGAGAGCTATTGCTCGCAGGATGGTCAAAGAATCAATGGAATCTATTGAAGATGAACGGCTAGAATTGATGGAGTTAGCTGCATCTGAAAAGGGACTTTCTTCAATTTTGTCTCTTGACTATGAAACCCTACAGAATCTTGAATTATTTAAAGATGGGAGGACTTCATTTCCGCCTCAGAGTGTACTGCTGAAAAGACCTTTCTCAATTCAACCTTGGTTGGATTCTGAGGAGAACGTAGGAAACCTTTTGATGGTTTGGAGGTTTTTGATCTCATTCGCTGATGTTCTTGGGATTTGGCCATTCACCTTGGATGAATTTTTACAAGCTCTCCATGACCATGATCCCAGGCTGTTAGGCGAGATTCATATTGCTCTTTTGAGATCTATTATAAAAGATATTGAGGATGTTGCAAGAACTACTGGGGCAGGGGCTAGTCATAATAATGCTGTCAACCCTTGTGGGGGTCATCCGCAAGTTGTTGAAGGGGCATATGTGTGGGGGTTTGATATAAGAAATTGGCAACGACTCTTAAATCCCTTAACATGGCCAGAAATTATGCGGCAATTTGCTTTATCGGCTGGATTTGGGCCACAGTTGAAGAAAAGAATCCTTGAACCAGTGTATCCTTGTGATAACAATCAGGTTATTGATGGTGAAGATGTTATTTCCAATCTACGTAGTGGGGCGGCAGTTGAAAATGCTGTTGCTATCATGCAAGAAAAGGGTTTATCGAACCAACGAAGATCTAGGCATCGCTTGACGCCTGGTACTGTTAAGTTTGCGGCCTTTCATGTGTTATCTCTTGAAGGAAGTAAGGGCCTTACTATATTGGAAACAGCTGACAAAATTCAGAAATCTGGACTTCGTGATCTTACGACAAGCAAAACTCCAGAGGCTTCTATAGCTGCTGCTTTGTCCAGGGACACAAAGCTTTTTGAAAGGACAGCTCCCTCGACATATTGTGTACGTCCTGCATATAGAAAGGACCCGGCTGATGGCGAGGCACTCCTCTCAGCTGCCAGGGAAAGAATCAGGATATTCAAAAATGGACTTGTCAACGCAGAAGAACCAGATGATGGTGAAAGGGATGATGATTCGGAAATTGGTATGGCAGAAGAACCTGAGGCTGATGATTTGGGTACTGAAACAAATAATAAGGAGGCTTCTGATTTTGTAGAATCTAGTTTGAACACTGTCGTTAAGAATAGAGAAAGCAGTGGTGAAATTTTGCAGACTCCTGATCGTGGCAATGGACAGATGAATGAGGGTTCAGCATCAATTGTTGCTGAAGAATTTAATCGGGAAATTGCTGCTAGTAGCAATGTTGTAACCAAACCTGATCTGGAAGACACCAGTATCGATGAAAGTAATCCAGGTGAACCATGGGTTGAAGGGCTTATTGATGGAGAATACTCAAATCTTAGTGTGGAAGAGCGACTTAATGCCCTTGTTGCTCTGATTGGTGTAGCAATTCAAGGAAATTCAATCCGTTTCACTCTTGAGGAGCGTCTAGAAGCAGCAAATGCTTTAAAGAAGCAGATGTGGACAGAGGTGCAGCTTGATAGACACCGAATCAAAGAGGAATCCTTTTTTAAGGTGCAGTCTGCCCCTTGTGTGGGAAATAAGAATGAACCAACTCCTTCAGTGTCAGCCATAGAGGGTAAACAGAGCCCTTTGCTTGATGTTGATGACAGGAATGACAAAACACTACCAGCTCCCCCCACCCAGCAACTACAGTTAAATGATGTGCTGGAAAATCAGACCTATCTTCAGAGTGTTCCATCGGAAGTGAACATAAAATTGCAAGACTCTGCTGTGACTGACAATTATTCTTGCCAGCAATTTGGATCTGGTGCTGAAAAGTCAAAATCAAATTTCAAGGCATACATTGGTCAATTGGCGGAAGAAACTTATATTTATAGGTCATTGCCTCTTGGTTTGGATCGGAGACGTAATCGATACTGGCAGTTCATTACATGTGCTTCTCAAAATGATCCAGGCTGTGGAAGGGTTTTTGTGGAGATGCACGATGGTTGTTGGATGCTGATTGATTCTGAAGAGGGTTTTGATGCTCTCTTGGCATCATTGGATGTACGTGGGATTAGGGAATCCCATTTGCACATGATGTTGCAACGAATTGAAATGTCCTTCAAGGAATCCGTTAGAAGGAATAAGTTGACAAGGCAAGACAGCGACACTGTTAATACGGAAGCTTTTCAAATGGCTACCAAGCATGGTGGCTGTGCTTCCATGTGCAGTACTAATTCAGATGTGCCAGAGACATCAACATCTTTTGTGGTTCAGCTGGGAAGGAATGATTCTGATAACCAAGAAGCTTTTAGGAGATACCAGGACTTTGAAAAATGGATGCTGAAGGAAGGCCTAGATTCCTCAGTATTATGTGCGTTGAGGGCTGGGAAGAGAAGGTGCCGTCAATTGCTGGGCATGTGTAATCACTGCCATGAGATCTATTTATCTGAAGAAACTCCATCTCCTTCCTGCTGTAGAACCCTCCGTAGTTGTAAGAGCAACTTAAGCTCTTCTGAACATATGGCTCAATGTGAAGGAAAAGTGAAGATTACCAGTGATTATGTATTTAGTGTCTCCCCTTCTCCATTAAGAATAAGATTGCTTAAAGTGCTGTTGTCAATACTTGAGGCTTCCATTCCTGAAGAAGCTCTTGAACCTATTTGGACGGACAGCTATCGGAAGTCTTGGATTATGAAACTGCATGCTGCTTCTTCCTCTGAAGAACTTCTTGAGATATTGACTTTACTGGAGGGTGCTATCAAGAGGGATTATTTGGCTTCGAACTTCAACACTACCAGTGAGCTGTTGGGTTCTATTTTTTCTTCTGGATTTCTTAGTGATTCCACGGGAGCTGACAGAATTCCTGTACTACCGTGGGTGCCTCATACAACAGCTGCTGTGGCGCTAAGGTTCATGGAACTTGACAGCTCAATCTTTTATACGTTGGAGCAGAAGCTGGAGTCCGAAAAGGACAAGAGAAATGAGAATGTTATGAAGTTTCCTTCAAAACATTCTTCTGCCAAAATTGCCCTAGTTGCTGGTATAGCCGACACTTCACATTTGGCTGGGCATAACATGGTTAATCTGGGTGCTGGATTTGCTAGCTACAGTCGAGGACAAAGGTCCCATGGACAGAGCCGTGGTCGCTCTTATGGTGGGGGATCACAGGGAAGGGTCATCAGTTCAAGATCTGAATCTAGAAAGAAAGTTACCGCCACTAGCAGCAGGAGGAGACTTGGACAGGGACTAAGATGGAAAGGGAAATCACGGGGTCATGGAGGACAGCGTCGTGCTCGACGAAGCGTGAGAAGTGGTAGGAAGAAACCAGCAGCTAAAGGACGTGAGATTACTGTTGAGAGAGATGCTCCCAAAGAGGAATCAGCTGGTATTTTTGTCAGGGAGGCAAGCAATGGAGCTGAGACCATTGGTCGTCAAATGGGGAATCCCGAAATTGCTGCAAGCAGTTCTGGGAGATCAGATTATGAGGAAGATAAATATCAAGTAACAGGTGACGAGGATGATTATCTAGTGGATAATAATGATAATGGCTATGATAGGTGTGGATTTAGTGGGAAGTCTGAGAATATGGTAGAAGGTATTAGTTTTAATTTAGATGATGAGGAAGACGGGGGTGGATTTAGTGGGAAGTCTGACAATTTAGTAGAAGCGATTGATTTTAATATAGATGATGAGGAAGAAGAGGATGTTGACGAGGACGAGGATGATGAACAAGTCGGTGTTGACGTTGAAGGCTTCATAAATGGGGATTCAGATATAGAAGAAAACGGGGAAGATGCAGAGCAAAACTTGGATCCAGATGGATTGAATTCTTCATCCTCAGAGTACAGCGGCTAG 5307 0.443 MEACSEGEQKKPPEGENKSKRKMKTASQLEILEKTYATEPYPSEALRAELSAKLCLSDRQLQMWFCHRRLKDRKAPAAKKPGNESPPGAVTPAPVADGFEQKATGDGGHGRDSISGKRRYSHMDPRRAIPRPCMAFPSIGGGLPAMESYYGSHQFKAELKAIAFVEEQLGEPLREDGPILGMEFDPLPPGAFGTPIGPTAVGQHRQSGRPFEAKIYERVDKGASRTLHEYKFIPEQPTVRNETYDYERVTPSNHYGSLDGIPHARTLLSSGRQFLDGNDIASYGYGYQNMLPGLNLLSQQGRQNHLLPSASGQNDNIPWKNTFADVPANSHIGAYPATKIDSMLTPSDQRVIHEEQISRFQRKRKNEEARMQRELEAQEKRMKKELEKQDILRRKREEQVRKEMERHERERRKEEERILRERQREVERNQREQKRELVRREKILQKESIRAEKRKQKEEVRKEKEAARIKAANERAIARRMVKESMESIEDERLELMELAASEKGLSSILSLDYETLQNLELFKDGRTSFPPQSVLLKRPFSIQPWLDSEENVGNLLMVWRFLISFADVLGIWPFTLDEFLQALHDHDPRLLGEIHIALLRSIIKDIEDVARTTGAGASHNNAVNPCGGHPQVVEGAYVWGFDIRNWQRLLNPLTWPEIMRQFALSAGFGPQLKKRILEPVYPCDNNQVIDGEDVISNLRSGAAVENAVAIMQEKGLSNQRRSRHRLTPGTVKFAAFHVLSLEGSKGLTILETADKIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCVRPAYRKDPADGEALLSAARERIRIFKNGLVNAEEPDDGERDDDSEIGMAEEPEADDLGTETNNKEASDFVESSLNTVVKNRESSGEILQTPDRGNGQMNEGSASIVAEEFNREIAASSNVVTKPDLEDTSIDESNPGEPWVEGLIDGEYSNLSVEERLNALVALIGVAIQGNSIRFTLEERLEAANALKKQMWTEVQLDRHRIKEESFFKVQSAPCVGNKNEPTPSVSAIEGKQSPLLDVDDRNDKTLPAPPTQQLQLNDVLENQTYLQSVPSEVNIKLQDSAVTDNYSCQQFGSGAEKSKSNFKAYIGQLAEETYIYRSLPLGLDRRRNRYWQFITCASQNDPGCGRVFVEMHDGCWMLIDSEEGFDALLASLDVRGIRESHLHMMLQRIEMSFKESVRRNKLTRQDSDTVNTEAFQMATKHGGCASMCSTNSDVPETSTSFVVQLGRNDSDNQEAFRRYQDFEKWMLKEGLDSSVLCALRAGKRRCRQLLGMCNHCHEIYLSEETPSPSCCRTLRSCKSNLSSSEHMAQCEGKVKITSDYVFSVSPSPLRIRLLKVLLSILEASIPEEALEPIWTDSYRKSWIMKLHAASSSEELLEILTLLEGAIKRDYLASNFNTTSELLGSIFSSGFLSDSTGADRIPVLPWVPHTTAAVALRFMELDSSIFYTLEQKLESEKDKRNENVMKFPSKHSSAKIALVAGIADTSHLAGHNMVNLGAGFASYSRGQRSHGQSRGRSYGGGSQGRVISSRSESRKKVTATSSRRRLGQGLRWKGKSRGHGGQRRARRSVRSGRKKPAAKGREITVERDAPKEESAGIFVREASNGAETIGRQMGNPEIAASSSGRSDYEEDKYQVTGDEDDYLVDNNDNGYDRCGFSGKSENMVEGISFNLDDEEDGGGFSGKSDNLVEAIDFNIDDEEEEDVDEDEDDEQVGVDVEGFINGDSDIEENGEDAEQNLDPDGLNSSSSEYSG 1768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4047g00016 1768 MobiDBLite consensus disorder prediction 1565 1591 - -
Pral4047g00016 1768 MobiDBLite consensus disorder prediction 1592 1612 - -
Pral4047g00016 1768 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Pral4047g00016 1768 Pfam Homeodomain 18 74 IPR001356 GO:0003677
Pral4047g00016 1768 Pfam DDT domain 551 606 IPR018501 -
Pral4047g00016 1768 MobiDBLite consensus disorder prediction 1521 1662 - -
Pral4047g00016 1768 MobiDBLite consensus disorder prediction 104 124 - -
Pral4047g00016 1768 CDD homeodomain 18 74 IPR001356 GO:0003677
Pral4047g00016 1768 Coils Coil 397 432 - -
Pral4047g00016 1768 SMART testlast3 550 609 IPR018501 -
Pral4047g00016 1768 MobiDBLite consensus disorder prediction 74 124 - -
Pral4047g00016 1768 MobiDBLite consensus disorder prediction 1712 1731 - -
Pral4047g00016 1768 Gene3D - 2 77 - -
Pral4047g00016 1768 ProSiteProfiles HARE-type HTH domain profile. 730 799 IPR007759 GO:0006355
Pral4047g00016 1768 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 5 1767 IPR044977 GO:0006357
Pral4047g00016 1768 MobiDBLite consensus disorder prediction 1738 1752 - -
Pral4047g00016 1768 SUPERFAMILY Homeodomain-like 12 74 IPR009057 -
Pral4047g00016 1768 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 933 971 IPR028942 -
Pral4047g00016 1768 SMART HOX_1 17 79 IPR001356 GO:0003677
Pral4047g00016 1768 MobiDBLite consensus disorder prediction 1522 1545 - -
Pral4047g00016 1768 MobiDBLite consensus disorder prediction 1 26 - -
Pral4047g00016 1768 Pfam HB1, ASXL, restriction endonuclease HTH domain 730 797 IPR007759 GO:0006355
Pral4047g00016 1768 Coils Coil 350 395 - -
Pral4047g00016 1768 Coils Coil 446 477 - -
Pral4047g00016 1768 MobiDBLite consensus disorder prediction 1712 1768 - -
Pral4047g00016 1768 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1115 1187 IPR028941 -
Pral4047g00016 1768 ProSiteProfiles DDT domain profile. 550 609 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4047g00016 Pral-Chr4047 126997 137336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4047g00016 7 1482 Homeobox Transcription Factor Family AT5G44180 50.592 0.0 1321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pral4047g00016 WSD 7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4047g00016 - - pcin:129313496 2669.03