Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4047g00012 ATGCTGTTGGAGAAGATGGACGACGGAGAAATTTCAAATATCGGCTTTCCTCAGAACCACCCACCAACCGCTGCATCATCTAACAATACCGATCCTCCTCCGGTTCTCAAGAGAAAGAGAAACCTCCCAGGGAACCCTGATCCTGAAGCGGAAGTGATAGCCCTATCTCCCAAGACTCTTATGGCGACCAACAGATTTCTGTGTGAAATCTGTGGAAAAGGCTTCCAGAGGGATCAAAATCTGCAACTTCATCGACGTGGGCATAATCTTCCGTGGAAGCTGAAACAGAGGACAAGCAAAGAAGTGAAAAAGCGAGTGTATGTGTGCCCAGAAAAAAGCTGCGTGCACAACCACCCATCGAGGGCTCTGGGAGATTTGACTGGCATCAAAAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTTCAGTCTGATTGGAAAGCCCACTCCAAAACCTGTGGTACTAGGGAATACAAATGTGACTGTGGCACCATCTTTTCACGGAGGGATAGCTTCATCACACATAGGGCCTTCTGTGATGCCCTAGCAGAAGAAACAGCAAGAGTGAACGCCGCATCCAACATGAACAACAACATAAGTTACAATAATATAATTGGAGCTGCTTTACTAGGACCAAACAACAACAATATGTCAACCCATTTTCCTTCAATCTTGAAGCCAATCTCAAACACCAATACCGAGGAAGCAAATAATCAAACACCTATTAGAGGGCTATCCCTATGGATGGGTCATCATCATCAACCTCACCAATCTGATCATCATCAAACAATAATGCCTAGTAATGGCAATATCGGTAACCCTCATGATCAGAATATGCATCATCAACTTGGGAACCACCAGCTTGTTTCTTCACACCCGCAGCAGTTAAATTGGGTGTTTGGAAACAAGCTTATTTCAAGTTCTTCATCATGCCAAGAGCTAGCAAGCACCTCAATTGGAATGATTAGTGTTCCTTCCTTGTACAGCTCCCAAAATCATCAAACATACCAAACAACCTCGGCAAACATGTCGGCTACAGCGCTGTTGCAAAAAGCTGCTCAGATAGGAGCAACCTCGACCACCTGTGACCCCACATTTCTGGGGAGCTTAGGGTTAAAATGTAGTACTAGTCAAGGTGTTCAAGAAGATGATCAAGGGAGCAACAAGTATTATGGCATGTACGGTTCGGGTTCGGGTTCAGGTTCGGTTCTCACTAATGTTGGTGGTGGAGGAAGTGATCAGACGACAGAGAACAACCAGGCAAGTGAAATGTCACAAATGCACCCGGCAAAACGCCCAAGGCAGGTATTACAGAATGAAGAAGGAGGGCAAACTAGGGATTTCCTTGGTGTTGGTGGTGTGCAAACCATTTGCCACCCTTCATCAATCAATGGATGGGTCTGA 1437 0.4579 MLLEKMDDGEISNIGFPQNHPPTAASSNNTDPPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVKKRVYVCPEKSCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNMNNNISYNNIIGAALLGPNNNNMSTHFPSILKPISNTNTEEANNQTPIRGLSLWMGHHHQPHQSDHHQTIMPSNGNIGNPHDQNMHHQLGNHQLVSSHPQQLNWVFGNKLISSSSSCQELASTSIGMISVPSLYSSQNHQTYQTTSANMSATALLQKAAQIGATSTTCDPTFLGSLGLKCSTSQGVQEDDQGSNKYYGMYGSGSGSGSVLTNVGGGGSDQTTENNQASEMSQMHPAKRPRQVLQNEEGGQTRDFLGVGGVQTICHPSSINGWV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4047g00012 478 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Pral4047g00012 478 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Pral4047g00012 478 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Pral4047g00012 478 MobiDBLite consensus disorder prediction 16 34 - -
Pral4047g00012 478 Gene3D Classic Zinc Finger 62 89 - -
Pral4047g00012 478 MobiDBLite consensus disorder prediction 413 437 - -
Pral4047g00012 478 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 466 IPR031140 -
Pral4047g00012 478 SMART c2h2final6 142 162 IPR013087 -
Pral4047g00012 478 SMART c2h2final6 107 137 IPR013087 -
Pral4047g00012 478 SMART c2h2final6 66 88 IPR013087 -
Pral4047g00012 478 Gene3D Classic Zinc Finger 99 190 - -
Pral4047g00012 478 MobiDBLite consensus disorder prediction 413 449 - -
Pral4047g00012 478 MobiDBLite consensus disorder prediction 1 48 - -
Pral4047g00012 478 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Pral4047g00012 478 FunFam protein indeterminate-domain 12-like 45 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4047g00012 Pral-Chr4047 102574 105385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4047g00012 33 478 IDZ Gene Family AT1G03840 52.906 5.46e-151 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4047g00012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4047g00012 K25870 - qsa:O6P43_028858 530.02