Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4046g00016 ATGGCGGGACCTATTCTTCGTTCTCTCTGGTCCTCTACCAGAAAATCGTTTTCCTCTTCGCCATCCCTTTTCACCCCATATCATTTGTTGCCGCCAACCAACACCGGTTCCCGCGCTTTCTCCGCCGCCCTGGCTACCGCCGCTGTCGAACCTAGCATCGCTCTCAACCCCAGCTGCCTCCGCAACGTCGCCGTGATTGCTCATGTTGACCATGGCAAGACCACCCTCATGGATCGACTGCTTCGTCAGTGTGGCGCCGATATACCCCACGAGCGCGCCATGGATTCCATCAGTCTGGAGCGCGAGCGCGGTATCACGATCGCTTCCAAGGTTACTTCGGTTTCATGGAAGGAAAATGAGCTAAATATGGTTGATACACCTGGACACGCAGATTTTGGTGGTGAAGTTGAACGAGTTGTTGGCATGGTTGAGGGAGCAGTATTGGTTGTAGATGCTGGTGAAGGTCCCCTTGCACAAACAAAATTTGTTTTGGCAAAAGCCTTAAAGTATGGGTTGCGGCCTCTTCTTCTTTTGAACAAAGTAGACCGACCTTCAGTCTCTGAGGAGAGGTGTAATGAAGTTGAGAGTGTGGTGTTTGATCTTTTTGCCAACCTTGGTGCAACAGAGGAACAATTAGACTTTCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTTTACCAAGGATCCTCCTGCTGAGACAAAAAATATGTCACAGCTTCTTGATGCCATTGTAACTCATGTCCCCCCACCAAAGGCAAACATTGGTGCGCCTTTTCAAATGCTGGTTTCAATGATGGAACGGGATTTCTATCTTGGGCGAATTTTGACTGGACGTGTTCATTCTGGGATTGTTCGTGTAGGTGACAAGGTTCATGGTCTATCTAACAAAGATTCTGGAGTAGAAAAGATTGAAGATGGAAAGGTTGTGAAATTAATGAAAAAGAAGGGTACAAGCATGGTTCCAATTGATTGTGCTGGAGCTGGTGATATTATTTCGATGGCTGGGTTGGCGAGTCCGATAATAGGCAACACAGTAGCAACTGCGGAGATTATGGCTGCATTACCCACAATTGAGCTGGATCCTCCAACAATTTCCATGACTTTTGGTGTAAATGACTCTCCTTTAGCTGGTCGTGATGGTACTCATTTGACTGGAGGAAAAATTGGCAATCGGCTGGTGTCCGAAGCTGAAACAAACATTGCCATAAATGTGCTACCAGGCTTATCAGATTCATATGAAGTTCAGGGAAGAGGAGAGCTACAATTGGGTATCCTTATTGAGAATATGAGGCGTGAAGGATTTGAGTTGTCTGTCTCTCCGCCTAAAGTCATGTATAAAACTGAAAGTGGTGAGAAACTTGAGCCGATTGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGGTTAGTTATGGAGGCCTTATCTCATAGGCGAGCTGAAGTTATGGACATGGGTCCCGTCTCTGGAACTGCTGGTCGGACTAGATTGTCTTTGACTTGTCCATCAAGGGGCCTGGTTGGTTATAGAAGTGTGTTCAGCAGTGACACGCGTGGAACTGGCTTCATGCACCGTGCTTTCCTTAGGTATGAAAAATTTCGAGGTCCTCTTGGCAATGTCAGGAAAGGAGTATTGGTATCAATGGGTTATGGTACAATTAGGGCTTATGCATTAATGAGCTTAGAAGCTCGTGGGACTTTATTTGTATCCCCGGGAATGGAGACATATGATGGGATGATTATTGGTGAACACTCACGAGATACAGATCTTGATGTCAATCCAGTGAGAGCTAAGGAACTTACAAATATTCGTGCTGCTGGCAGTGATGAAAATATCAAGCTGTCTCCTCCTCGTCTTATGACCCTTGAAGAAGCCATAGGATATGTAGCTTCAGATGAGCTTATCGAGGTGACTCCAAAGGCTATACGGTTGAGGAAGAAATATCTTGATGTTAACAAGCGCAAAAGCATGAGTAAAAAGCCAAAGGAATGA 2007 0.4584 MAGPILRSLWSSTRKSFSSSPSLFTPYHLLPPTNTGSRAFSAALATAAVEPSIALNPSCLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPLLLLNKVDRPSVSEERCNEVESVVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPAETKNMSQLLDAIVTHVPPPKANIGAPFQMLVSMMERDFYLGRILTGRVHSGIVRVGDKVHGLSNKDSGVEKIEDGKVVKLMKKKGTSMVPIDCAGAGDIISMAGLASPIIGNTVATAEIMAALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGNRLVSEAETNIAINVLPGLSDSYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTESGEKLEPIEEVTIEVNDEHVGLVMEALSHRRAEVMDMGPVSGTAGRTRLSLTCPSRGLVGYRSVFSSDTRGTGFMHRAFLRYEKFRGPLGNVRKGVLVSMGYGTIRAYALMSLEARGTLFVSPGMETYDGMIIGEHSRDTDLDVNPVRAKELTNIRAAGSDENIKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVNKRKSMSKKPKE 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4046g00016 668 CDD BipA_III 367 444 IPR047043 -
Pral4046g00016 668 FunFam Elongation factor family protein 257 361 - -
Pral4046g00016 668 CDD BipA_TypA_II 263 360 IPR047042 -
Pral4046g00016 668 Gene3D Elongation Factor G (Translational Gtpase), domain 3 368 652 - -
Pral4046g00016 668 NCBIfam translational GTPase TypA/BipA 60 660 IPR006298 GO:0003924|GO:0005525
Pral4046g00016 668 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 58 256 IPR000795 GO:0003924|GO:0005525
Pral4046g00016 668 FunFam GTP-binding protein TypA 545 631 - -
Pral4046g00016 668 Gene3D - 450 544 - -
Pral4046g00016 668 PRINTS GTP-binding elongation factor signature 174 183 IPR000795 GO:0003924|GO:0005525
Pral4046g00016 668 PRINTS GTP-binding elongation factor signature 102 110 IPR000795 GO:0003924|GO:0005525
Pral4046g00016 668 PRINTS GTP-binding elongation factor signature 122 132 IPR000795 GO:0003924|GO:0005525
Pral4046g00016 668 PRINTS GTP-binding elongation factor signature 62 75 IPR000795 GO:0003924|GO:0005525
Pral4046g00016 668 PRINTS GTP-binding elongation factor signature 138 149 IPR000795 GO:0003924|GO:0005525
Pral4046g00016 668 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 56 230 - -
Pral4046g00016 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 265 IPR027417 -
Pral4046g00016 668 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 95 110 IPR031157 -
Pral4046g00016 668 SUPERFAMILY EF-G C-terminal domain-like 459 575 IPR035647 -
Pral4046g00016 668 Pfam Elongation factor Tu domain 2 277 350 IPR004161 GO:0005525
Pral4046g00016 668 NCBIfam small GTP-binding protein domain 61 204 IPR005225 GO:0005525
Pral4046g00016 668 SUPERFAMILY Translation proteins 205 361 IPR009000 -
Pral4046g00016 668 Gene3D bipa protein 545 660 IPR042116 -
Pral4046g00016 668 Gene3D Translation factors 257 361 - -
Pral4046g00016 668 Gene3D - 58 256 IPR027417 -
Pral4046g00016 668 CDD BipA_TypA_C 459 539 IPR035651 -
Pral4046g00016 668 SUPERFAMILY EF-G C-terminal domain-like 365 448 IPR035647 -
Pral4046g00016 668 CDD TypA_BipA 60 255 IPR047041 -
Pral4046g00016 668 FunFam GTP-binding protein TypA 368 477 - -
Pral4046g00016 668 FunFam GTP-binding protein TypA 59 256 - -
Pral4046g00016 668 FunFam GTP-binding protein TypA 450 544 - -
Pral4046g00016 668 Pfam Elongation factor G C-terminus 457 540 IPR000640 -
Pral4046g00016 668 Pfam Elongation factor Tu GTP binding domain 60 253 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4046g00016 Pral-Chr4046 70074 79521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4046g00016 60 183 Eukaryotic Initiation Factors Gene Family AT3G22980 43.077 3.95e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4046g00016 K06207 - gmx:100789218 1125.15