Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4046g00005 ATGAATAATCCTCAGGACGGCAGCATTCCTTTCGAACTTCCGGCAGCTCTCCCAAGAAGACCGGTGAACTCCGATCACAACAGCTTGAACAGCAGTATCTTGTACATAGCCATTATCTCTTTGTCAATCGTCTTAGTTCTCGTCTTCGCCCTTCATCTCTACGCCAGGTATGTCCTCCGCCGCCAAGCCCGCCGTCGCGCCGCCATCCACCATCTCAGCCTCGCCGTGGCTAGATTCTCCTCTGGCGATCCACCAAACAACACCGGCCTCGACCCCACGGTCATTGCCTCTCTTCCCACCTTCGTCTTCAAAAGAAGAAACGAAAACGATGACCGCCGCCGTGGCGATTCTTCCTCCGTTATGGAATGCTCTGTTTGCTTGAGCAATCTGGAGGGTGGAGAAGAAGCGAGGCTGCTTCCCAATTGCCAGCACGTGTTCCACGTGGCTTGTATTGACCGGTGGCTGGAGTCTCATTCGACGTGCCCGATTTGTCGAACCATGGCTCGGCCGGTGATTGAGCCACGGCCACGTGAGGGTCCGGTCGGGGCCCGCCAGGTCCAGCCGGCTGTTCACGACGCGCCCACAGCTCCGCCGGTGGTGGAGCCTACTGCAGAAGGTACATCGGACGGTGGTGGAGCTAAAAGTAGTGGTTCAGTTTCAAGGTTGAGCTCCTTCAGAAGAATGCTAAGCAGAGAAAGATCGTCCAGGAGAATCCAACCTCCTTCTTCCTCCTCTATCGGTGATGATAGTCTTGTTCGTGATTTAGAGAGACAGTGA 777 0.5534 MNNPQDGSIPFELPAALPRRPVNSDHNSLNSSILYIAIISLSIVLVLVFALHLYARYVLRRQARRRAAIHHLSLAVARFSSGDPPNNTGLDPTVIASLPTFVFKRRNENDDRRRGDSSSVMECSVCLSNLEGGEEARLLPNCQHVFHVACIDRWLESHSTCPICRTMARPVIEPRPREGPVGARQVQPAVHDAPTAPPVVEPTAEGTSDGGGAKSSGSVSRLSSFRRMLSRERSSRRIQPPSSSSIGDDSLVRDLERQ 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4046g00005 258 CDD RING-H2_EL5-like 122 165 - -
Pral4046g00005 258 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Pral4046g00005 258 SUPERFAMILY RING/U-box 94 173 - -
Pral4046g00005 258 SMART ring_2 123 164 IPR001841 -
Pral4046g00005 258 MobiDBLite consensus disorder prediction 209 225 - -
Pral4046g00005 258 FunFam E3 ubiquitin-protein ligase ATL6 80 170 - -
Pral4046g00005 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 170 IPR013083 -
Pral4046g00005 258 MobiDBLite consensus disorder prediction 235 249 - -
Pral4046g00005 258 MobiDBLite consensus disorder prediction 173 258 - -
Pral4046g00005 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 169 - -
Pral4046g00005 258 Pfam Ring finger domain 122 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4046g00005 Pral-Chr4046 35916 37135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4046g00005 20 258 C3H Transcription Factor Family AT2G42360 45.600 6.12e-53 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4046g00005 K19038 - jre:108993654 181.415