Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4044g00077 ATGGCGGCGATGAGAGCAGCAGTGGCGGCGCCTCGCGGTCTAAGGCGCCTATTCTCAACCACGACAACTTCAACCTTCATGCCTCCTCCCCCCTCGGCGGCGGCTCCTGGTCGAGAGAAGGCCGACCCTAGTCCCAACCTCTTTGTCTCTGGACTTAGCAAACGTACTACTACAGAAAAGCTACGGGAGGCATTTTCCCAGTTTGGTGAAGTTGTTAATGCTAGAGTGGTTACTGACAGAGTATCAGGTTACTCTAAAGGGTTTGGCTTTGTAAGATATGCCACCGTAGAAGAAGCTGCAAAAGGCATTGAGGGCATGGATGGAAAGTTTCTGGATGGTTGGGTGATATTTGCGGAGTATGCAAGACCAAGACCACCACCGGGACAACCTGGACAACCTATGCCTCCTCCGTATGGCCAGCAGTACTAA 429 0.5245 MAAMRAAVAAPRGLRRLFSTTTTSTFMPPPPSAAAPGREKADPSPNLFVSGLSKRTTTEKLREAFSQFGEVVNARVVTDRVSGYSKGFGFVRYATVEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPGQPMPPPYGQQY 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4044g00077 142 PANTHER NUCLEOLAR PROTEIN 8 27 135 - -
Pral4044g00077 142 MobiDBLite consensus disorder prediction 122 142 - -
Pral4044g00077 142 SMART rrm1_1 46 119 IPR000504 GO:0003723
Pral4044g00077 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 113 IPR000504 GO:0003723
Pral4044g00077 142 SUPERFAMILY RNA-binding domain, RBD 27 139 IPR035979 GO:0003676
Pral4044g00077 142 MobiDBLite consensus disorder prediction 123 142 - -
Pral4044g00077 142 CDD RRM_SAFB_like 46 119 - -
Pral4044g00077 142 Gene3D - 19 130 IPR012677 -
Pral4044g00077 142 MobiDBLite consensus disorder prediction 21 45 - -
Pral4044g00077 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Pral4044g00077 142 FunFam RNA recognition motif-containing protein 24 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4044g00077 Pral-Chr4044 522125 525042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4044g00077 46 122 Eukaryotic Initiation Factors Gene Family AT2G23350 38.961 8.75e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4044g00077 - - csav:115694772 180.259