Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4044g00043 ATGGTTTCCCCGGAAAACTCCAATTGGTATTTCGATTACGGCCTCATTGACGACATATCCGTCCCTGATGGGAACTTCACTGTCCATGCCGCCGGGTTCAACTGGCCGGCGCAGGCCTTAAATGGTTCTTCAAATGTCAGCACGGAAATTGATGGCTCATTGGGGGATTCTGATGGCCTCAAAGAATCTGGTTCAAAGAAGAGGAGTAGATCTGATTCATGTACCGCTTCTAGCTCCAAGGCATGTCGTGAGAAATTGCGGAGGGATAGGTTGAATGACAAGTTTCTTGAATTAAGCTCTATTTTGGAGCCTGGAAAGCCTCCCAAAACAGACAAAGCTGCCATTTTGATTGATGCCGTGCGCATGGCGACGCAGTTACGGGGTGAAGCCCAGAAGTTGAAAGATTCAAATATGAGTCTTCAAGAGAAGATAAAAGATTTGAAGGCTGAGAAGAATGAACTTCGCGACGAGAAACAGATGCTCAAGGGAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAAACTATCAATGTACAGCCTAGTTTCTTGCCTACCCCACCTGCAATTCCTGCTGCATATGCCGCTGCCCAAGGCCAGGCCCCTGGCAACAAGTTGGTACCATTTATCAGTTACCCAGGTGTTGCCATGTGGCAATTTATGCCACCAACTTCAGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTTGCTTAA 714 0.4762 MVSPENSNWYFDYGLIDDISVPDGNFTVHAAGFNWPAQALNGSSNVSTEIDGSLGDSDGLKESGSKKRSRSDSCTASSSKACREKLRRDRLNDKFLELSSILEPGKPPKTDKAAILIDAVRMATQLRGEAQKLKDSNMSLQEKIKDLKAEKNELRDEKQMLKGEKEKLEQQLKTINVQPSFLPTPPAIPAAYAAAQGQAPGNKLVPFISYPGVAMWQFMPPTSVDTSQDHVLRPPVA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4044g00043 237 FunFam Transcription factor bHLH34 66 124 - -
Pral4044g00043 237 PANTHER BHLH TRANSCRIPTION FACTOR 4 237 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pral4044g00043 237 MobiDBLite consensus disorder prediction 50 79 - -
Pral4044g00043 237 Pfam Helix-loop-helix DNA-binding domain 79 122 IPR011598 GO:0046983
Pral4044g00043 237 Gene3D - 76 152 IPR036638 GO:0046983
Pral4044g00043 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 144 IPR036638 GO:0046983
Pral4044g00043 237 CDD bHLH_AtILR3_like 80 155 - -
Pral4044g00043 237 Coils Coil 123 178 - -
Pral4044g00043 237 SMART finulus 81 132 IPR011598 GO:0046983
Pral4044g00043 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4044g00043 Pral-Chr4044 213340 216752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4044g00043 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.803 2.70e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4044g00043 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4044g00043 - - csav:115725145 365.925