Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4042g00004 ATGGCCATCCTTCTTTGTGCGCATGTTTATAGTTATACCATTGTGGTTCTATTGTTGTCTTCGTTATTAGCCACTGCTGTTGATATTATTACACAATCTCAGCCACTGGTTGACGGTGGAACAACCACCTTGGTGTCTGAAAATGGAAAGTTCGAGCTAGGTTTTTTCAGCCCAGGTAGTTCCACAAACCGATACATCGGAATCTGGTTCAAGAACATCCCAACTAGAAGGATTGTCTGGGTTGCCAACCGTGAAAAACCAGTCAAAGGTAATTCAGGGAAGCTGAGCATTAACACAGAAGGAAACCTTGTGCTTCTAAGCCAGAACGAGACTGTTGTTTGGTTAGCAAATTCAACCAAAAAAGCTTCAAGTCCAATCGTACAACTTCTAGACTCTGGAAATTTGGTTCTGAAGGATGAACAAGACCAGATCAGTCCACAAAACTACTTGTGGCAGAGTTTTGATTATCCTTCTGATACTCTTTTGCCAGGAATCAAGTTTGGATGGGACCTTAGAACTGGTCTTAATCGACATTTAACGGCATGGAAAAGTTGGGATGATCCTTCTCCAGGAGACTTCAGAAGTGAACTCATGCTTCACAATTTACCAGAAATAGTCTTATGGGAAGGCTCCACAGAATATCACAGAAGTGGCCCATGGAATGGTCTTGATTTTAGTGGCACTCCTACAACGATGGAAGAATTAGTTCATAATAACTTAACATTGGTTTCCAATGAAGACGAGGTTTATTTCATATACACTCCCGACAATGAGTCAGAGGTTTCTATAAGAGTTTTAAACCAAACAAAGCACGCTTTGCAGAGGCTTGTGTGGATTGAAGATGGAAAAACATGGAAATCTTTTGGTGATCTACCAAGAGATAATTGTGAACTATATAATCTTTGTGGTGCATATGGAAATTGCATCATCGTTGATACAGCTATATGCCAGTGCTTGAAGGGATTCAAGCCAAAATCACCCAAAAACTGGGAAATGTTTGATTGGACAGGAGGGTGTGTTCACAGTGAACTATGGAGCTGTAAGGTGAAAGGTAAAGACAGTTTCCTTAAATTTAGTGGCCTGAAATTACCAGATATTACAAAATCTTGGGTCAATACAAGTATGACACTTGAGGAGTGCAAAGCCAAATGTTGGGAAAATTGTTCTTGTACTGCTTATGCTAATTCAGATATCAGAAGAGGAGGTAGTGGTTGTGTCATGTGGTTTGGTAATCTTACTGATATGAAACAAATGTCAAATGATGTTGATCAAGATTTGTATATTCGAATTGCTTCTGCAGAACTAGCTAACCATGAAGGTAATAATGAATACAAGATAAAGATAATTGTGATCTCAGTTACCGTTTCTGGAGTTCTTGTGATGCTTCTCACATTCTATATTTATAGGAGCAAAAGAAAACCTAAAGCAAATAACGATGAAAGCTCAGAAGAAGATTTGGAGCTTCCTCTCTTTGACTTTACAATAATAGCTAATGCTACGCATAACTTCTCCATTGACAATATGCTTGGACAAGGTGGTTTTGGACCAGTATACAAGGGTATATTAAATGATGGACAAGAGATTGCTATCAAGAGACTATCACAGAACTCTCACCAAGGAATGGAAGAATTCAAGAATGAAGTTATATTATGTGCCAAACTTCAACATCGTAATCTAGTTAAAGTTCTTGGATGTTGCATCCAAGGAGAGGAGAAAATGCTGATATACGAGTACATGCCTAATAAGAGTTTGGATTTGTTTATTTTTGGCTCTTCTACCCAAACTACACCTCTAAATTGGTCACAACGATTTTACATTATATGTGGGATTGCTCGAGGTCTTTTGTATCTTCATCAGGATTCAAGATTAAGAATTATTCACAGAGATCTTAAAGCAAGTAATATATTACTCGACAATGAATTGAATCCAAAGATCTCCGATTTTGGTTTGGCAAAGATTTTTGGAAGAGATCAAATTGAAGAGAATACAAAGCGAATTGTCGGTACATAG 2010 0.3811 MAILLCAHVYSYTIVVLLLSSLLATAVDIITQSQPLVDGGTTTLVSENGKFELGFFSPGSSTNRYIGIWFKNIPTRRIVWVANREKPVKGNSGKLSINTEGNLVLLSQNETVVWLANSTKKASSPIVQLLDSGNLVLKDEQDQISPQNYLWQSFDYPSDTLLPGIKFGWDLRTGLNRHLTAWKSWDDPSPGDFRSELMLHNLPEIVLWEGSTEYHRSGPWNGLDFSGTPTTMEELVHNNLTLVSNEDEVYFIYTPDNESEVSIRVLNQTKHALQRLVWIEDGKTWKSFGDLPRDNCELYNLCGAYGNCIIVDTAICQCLKGFKPKSPKNWEMFDWTGGCVHSELWSCKVKGKDSFLKFSGLKLPDITKSWVNTSMTLEECKAKCWENCSCTAYANSDIRRGGSGCVMWFGNLTDMKQMSNDVDQDLYIRIASAELANHEGNNEYKIKIIVISVTVSGVLVMLLTFYIYRSKRKPKANNDESSEEDLELPLFDFTIIANATHNFSIDNMLGQGGFGPVYKGILNDGQEIAIKRLSQNSHQGMEEFKNEVILCAKLQHRNLVKVLGCCIQGEEKMLIYEYMPNKSLDLFIFGSSTQTTPLNWSQRFYIICGIARGLLYLHQDSRLRIIHRDLKASNILLDNELNPKISDFGLAKIFGRDQIEENTKRIVGT 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4042g00004 669 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 659 - -
Pral4042g00004 669 Gene3D - 21 154 IPR036426 -
Pral4042g00004 669 Gene3D Phosphorylase Kinase; domain 1 476 578 - -
Pral4042g00004 669 Pfam S-locus glycoprotein domain 216 326 IPR000858 GO:0048544
Pral4042g00004 669 Gene3D Hepatocyte Growth Factor 346 432 - -
Pral4042g00004 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 468 578 - -
Pral4042g00004 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 579 669 - -
Pral4042g00004 669 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Pral4042g00004 669 SMART serkin_6 503 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4042g00004 669 CDD B_lectin 33 157 IPR001480 -
Pral4042g00004 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Pral4042g00004 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 154 - -
Pral4042g00004 669 ProSiteProfiles Protein kinase domain profile. 503 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4042g00004 669 ProSiteProfiles Bulb-type lectin domain profile. 27 150 IPR001480 -
Pral4042g00004 669 SMART ntp_6 350 430 IPR003609 -
Pral4042g00004 669 Pfam Protein tyrosine and serine/threonine kinase 505 658 IPR001245 GO:0004672|GO:0006468
Pral4042g00004 669 Pfam D-mannose binding lectin 78 183 IPR001480 -
Pral4042g00004 669 Pfam PAN-like domain 347 415 IPR003609 -
Pral4042g00004 669 SUPERFAMILY Protein kinase-like (PK-like) 481 669 IPR011009 -
Pral4042g00004 669 Gene3D Transferase(Phosphotransferase) domain 1 579 669 - -
Pral4042g00004 669 CDD PAN_AP_plant 346 431 - -
Pral4042g00004 669 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 188 IPR036426 -
Pral4042g00004 669 SMART blect_4 35 157 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4042g00004 Pral-Chr4042 16807 19365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4042g00004 430 669 Receptor kinase-like Gene Family AT4G23230 52.459 3.39e-76 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral4042g00004 PK_Tyr_Ser-Thr 9.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4042g00004 - - gsj:114378841 826.239