Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4032g00004 ATGAGCAGAGCCGGGGACGAAGAAGAGGAAGACGAGTGCTTCTACGAGTCCCACGACCGCCTAGTTTCCTCATCTTGCTCTTGTTCCACTTCCAACTCCGACGACGACAACGACTCCAATTCCAACTCTCCGAATTATGGTTCCAACCAGCCCTTTCCTGTCCCCAAATTCCCGCTCGCCATGTCCAAGTACGACATATGGATCTCCGAACCCTCCTCTGTGTCGGAACGCCGGACCCGCCTCCTTCGAGAGATGGGCCTCGGCGGTGACCCATCATTGTCCCGGGGAAAGCCTTCCTCCGCCGCTGATCTTAGAGAAATGGGCAATGGAGAGTTTGGGCGACCGGTTTCGTCCGATCACTTAAGCCGCCAACAACAGGCTGCAAGTTCTAGTTGCTCCACTGGCATGTTCCAATCGAAATCAGACGGTGCAGCGGATCGCAGTGACTTGTCTGTGTCTGGTCAGTCTCATGATCGTTGTAATAAGTCTTCTTTTTGTTCGTCTTCTTCAATTCTTTCTATTCATTCGGTCGCACCAGAGACCGGTTCATTTGTAAATAACCGTAATCTTGTCGTCAAGTCAAGGGGAGTTAATGGTAATGGATCACCCGTTGATAGTGCCGCTTCCCTTAATAAGCCGCCTGCTGGGAAAAATTGTAAAAGGGGGAATGAAATTCAGAGCGAATCCTCGAACTTGAGTGTGGATTTCGATCATAGCTTGGTGGTGTCCGTTTCGGAAATTGAAGGTACGGAGGTAGAGGAGGTTGTGGACTGTAATGGGGTTGACAGCGTAAATGAACAAGTGTGTACCATAAGAGATCTCGATAATGGGAAGGAGTTTGTAGTCAAGGAGGTTAGGGAAGACGGAACGTGGAGCAAACTCAAAGAAGTCGGGACTGGAAGGCAGTTGACTATGGAGGAATTTGAGATGACGGTTGGGCACTCTCCAATAGTTCAAGAATTAATGAGACGGCAAAGTGTTGAGGAGGGCAATAAGGATAGTGTAGATTCTAATGCAAGTGGCGGCAGTGGAGGGAGTTCCAAGCCGAAGAAGAAGGTGGGTTGGTTTAAGAGTATCAAGAATGTTGCAAGCACTATGACGGGTTATAAAGAGCGACGAAGTAGTGATGAAAGGGATACCTCATCTGAGAAGGGTGGCCGCAGGTCAAGCTCAGCAACGGATGATAGCCAGGATTGTTCATTTCACGGGCCTGAGAGAGTACGGGTTAGGCAGTATGGGAAGTCTTGCAAAGAGCTTACAGGACTTTATAAAAGCCAGGAAATACAGGCTCACAATGGATCTATATGGAGCATTAAGTTTAGTTTGGATGGAAAATACCTTGCCAGTGCAGGTGAGGATTGTCTAATACATGTTTGGCAAGTTGTGGAGTCAGAGAGGAAGGGAGAGCTACTGATGGAGAGAGCTGAAGATGGGAACATGAACATGTTGTTTGTTGTGAATGGATCGCCAGAGCCAACTCTGCTCTCCCCCGGAATGGACAATCATCCTGACAGGAAGAGAAGGGGGAGATCATCCATAAGCAGAAAATCGTTGAGCTTGGATCAATTAGTGGTGCCGGAAACTATTTTTGCGCTCAGTGAAAAACCCATTTGCTCATTCCAAGGCCATCATAATGATGTCCTTGACCTATCTTGGTCCAAGTCTCAGCATTTGCTCTCATCTTCTATGGACAAAACAGTGCGGCTGTGGCACTTGACTAGCAAGACTTGTTTGAAAGTTTTTTCACACAGTGACTTTGTAACCTGCATCCAGTTTAATCCTGTTGATGATAGATATTTCATTAGTGGATCGCTGGATTCTAAGGTTCGCATATGGAGCATTCCTGATCGTCAAGTTGTTGATTATACTGATTTACACGAGATGGTCACTGCGGCTTGCTATACATCTGATGGGCAGGGTGCGTTAATTGGTTCTTACAAGGGTAGCTGCCATTTATATGATACATCTGATAATAAGTTGCAACAGAAAAGTCAAATCAATTTGCAGAACAAGAAAAAGAGATCGCATCACAAGAAAATCACTGGCTTCCAGTTTGCCCCGGGAAGTTCTTCAGAAGTACTTATCACGTCTGCTGATTCAAGAATTCGGGTTGTTGATGGTGTTGATCTGGTTCATAAGTTCAAAGGATTTCGTAACCCAAATAGCCAGATTTCTGCCTCTCTCACAGCAAATGGAAAATATGTAATCTCAGCAAGTGCGGATTCCCATGTGTATATATGGAAAAATGAAGCTGATTGCAGACCTAACCGGAGCAAAGGTGTTACTGTAACGCAATCGTATGAACATTTTCACTGTAAAGATGTTTCAGTGGCAATTCCCTGGCCTGGTATGGGCGATGCCTGGGAAATGCCTGAGACTTTGTCTGGAGAACAGACCGGTGATGATAATATTCTGGATGATGTCATGTCTGCTAATCATCCTCCTACCCCGGTGGAGGATAATTTTGGTACTGATGGTTCGCAATCGGCATCAGGATGCACCAACAGTCCTCTTCATGGAACAATTGCAAGCACAACAAACGATTACTTCTTTGATAGAATTTCTGCGACGTGGCCAGAGGAAAAACTTGTTGTAGCTGCACGGAACCGAACCCCTCGAGTCAGCATAGATCTCTCCAGTGGGGTGAGCCAAAACATGTCAGCGTGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGGGAAATTAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2745 0.463 MSRAGDEEEEDECFYESHDRLVSSSCSCSTSNSDDDNDSNSNSPNYGSNQPFPVPKFPLAMSKYDIWISEPSSVSERRTRLLREMGLGGDPSLSRGKPSSAADLREMGNGEFGRPVSSDHLSRQQQAASSSCSTGMFQSKSDGAADRSDLSVSGQSHDRCNKSSFCSSSSILSIHSVAPETGSFVNNRNLVVKSRGVNGNGSPVDSAASLNKPPAGKNCKRGNEIQSESSNLSVDFDHSLVVSVSEIEGTEVEEVVDCNGVDSVNEQVCTIRDLDNGKEFVVKEVREDGTWSKLKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQSVEEGNKDSVDSNASGGSGGSSKPKKKVGWFKSIKNVASTMTGYKERRSSDERDTSSEKGGRRSSSATDDSQDCSFHGPERVRVRQYGKSCKELTGLYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCLIHVWQVVESERKGELLMERAEDGNMNMLFVVNGSPEPTLLSPGMDNHPDRKRRGRSSISRKSLSLDQLVVPETIFALSEKPICSFQGHHNDVLDLSWSKSQHLLSSSMDKTVRLWHLTSKTCLKVFSHSDFVTCIQFNPVDDRYFISGSLDSKVRIWSIPDRQVVDYTDLHEMVTAACYTSDGQGALIGSYKGSCHLYDTSDNKLQQKSQINLQNKKKRSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNPNSQISASLTANGKYVISASADSHVYIWKNEADCRPNRSKGVTVTQSYEHFHCKDVSVAIPWPGMGDAWEMPETLSGEQTGDDNILDDVMSANHPPTPVEDNFGTDGSQSASGCTNSPLHGTIASTTNDYFFDRISATWPEEKLVVAARNRTPRVSIDLSSGVSQNMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4032g00004 914 PANTHER WD REPEAT DOMAIN 44 6 911 IPR040324 -
Pral4032g00004 914 MobiDBLite consensus disorder prediction 366 404 - -
Pral4032g00004 914 Gene3D - 391 493 IPR015943 GO:0005515
Pral4032g00004 914 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 622 IPR001680 GO:0005515
Pral4032g00004 914 ProSiteProfiles Trp-Asp (WD) repeats profile. 540 580 IPR001680 GO:0005515
Pral4032g00004 914 MobiDBLite consensus disorder prediction 196 224 - -
Pral4032g00004 914 MobiDBLite consensus disorder prediction 20 50 - -
Pral4032g00004 914 SUPERFAMILY WD40 repeat-like 422 749 IPR036322 GO:0005515
Pral4032g00004 914 Gene3D - 518 774 IPR015943 GO:0005515
Pral4032g00004 914 MobiDBLite consensus disorder prediction 118 162 - -
Pral4032g00004 914 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 614 - -
Pral4032g00004 914 ProSiteProfiles Trp-Asp (WD) repeats profile. 428 469 IPR001680 GO:0005515
Pral4032g00004 914 MobiDBLite consensus disorder prediction 73 162 - -
Pral4032g00004 914 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 428 461 - -
Pral4032g00004 914 PRINTS G protein beta WD-40 repeat signature 447 461 IPR020472 -
Pral4032g00004 914 PRINTS G protein beta WD-40 repeat signature 558 572 IPR020472 -
Pral4032g00004 914 PRINTS G protein beta WD-40 repeat signature 600 614 IPR020472 -
Pral4032g00004 914 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 540 574 - -
Pral4032g00004 914 MobiDBLite consensus disorder prediction 1 55 - -
Pral4032g00004 914 MobiDBLite consensus disorder prediction 326 352 - -
Pral4032g00004 914 MobiDBLite consensus disorder prediction 370 391 - -
Pral4032g00004 914 FunFam WD repeat-containing protein 44 521 787 - -
Pral4032g00004 914 FunFam Transducin/WD40 repeat-like superfamily protein 386 489 - -
Pral4032g00004 914 MobiDBLite consensus disorder prediction 493 514 - -
Pral4032g00004 914 Pfam WD domain, G-beta repeat 576 613 IPR001680 GO:0005515
Pral4032g00004 914 Pfam WD domain, G-beta repeat 535 570 IPR001680 GO:0005515
Pral4032g00004 914 Pfam WD domain, G-beta repeat 710 748 IPR001680 GO:0005515
Pral4032g00004 914 Pfam WD domain, G-beta repeat 427 459 IPR001680 GO:0005515
Pral4032g00004 914 SMART WD40_4 615 654 IPR001680 GO:0005515
Pral4032g00004 914 SMART WD40_4 667 706 IPR001680 GO:0005515
Pral4032g00004 914 SMART WD40_4 421 460 IPR001680 GO:0005515
Pral4032g00004 914 SMART WD40_4 533 571 IPR001680 GO:0005515
Pral4032g00004 914 SMART WD40_4 707 748 IPR001680 GO:0005515
Pral4032g00004 914 SMART WD40_4 574 613 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4032g00004 Pral-Chr4032 41478 47808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4032g00004 527 745 U-box Gene Family AT1G04510 27.500 8.15e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4032g00004 K20241 - qsa:O6P43_000927 1340.87