Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4030g00011 ATGAAGAGCTATTTCCTTCTCTTTCATGGGCAAATTGCTGTAGAACTGGAAACAAAAATGGAACCGGCGTGCTTTGACTGTAATGGGGGTGTCTCAAGGAGGAAAAATTTGAAATCAATTTCTTCACAGACTAGCACTGCTGATAGTGACCATGGTTGCTTTGAGTGCAACATATGTTTGGAGTCAGCTCATGATCCTGTGGTCACTCTGTGCGGTCACTTGTACTGCTGGCCTTGCATATTCAAGTGGCTTCAAGTTCAGGACTCTTCCGATGAATCAGACCAGCTGCAACCTACATGCCCAGTTTGTAAAGCCGATCTCTCTCATACTTCATTAGTCCCTCTTTATGGCAGAGGTGCGCATAGTTCGGATTCTGAGCCCAAGAAAACCCAGATGGATATAGGAATACCTCGTAGACCGCCTCCTCACACATCGAATGCTACCTTAAATTCTCCAAGTGCATCTACTTCTCAACTGGGTCAACTCCCAAGCTACTTCCAGTCGCAAACGCAGCAATACTTGCCTCACCTTTATGGAGGATATGCTATTAATAGAACACCATATCTTGGTGTTGCAGCCCTGACTAGTCTCTCCTATCCTATTATTGATATGTTCAGGGAAACGGTCTTTGCAGGGATCTTTGGGAGTTCCGGTTCTAATTCATTGGCGCATCGTTATGCCCGTTACTACCCTCATATTAGGAGTGACAGTCATAGAATGAGAAGGCAGGAAATGCTCATTGACAAGTCTCTGAGCAGAGTATCTTTCTTTCTCCTCTGTTGTGTCATTCTGTGTCTTCTCTTGTTTTGA 810 0.4469 MKSYFLLFHGQIAVELETKMEPACFDCNGGVSRRKNLKSISSQTSTADSDHGCFECNICLESAHDPVVTLCGHLYCWPCIFKWLQVQDSSDESDQLQPTCPVCKADLSHTSLVPLYGRGAHSSDSEPKKTQMDIGIPRRPPPHTSNATLNSPSASTSQLGQLPSYFQSQTQQYLPHLYGGYAINRTPYLGVAALTSLSYPIIDMFRETVFAGIFGSSGSNSLAHRYARYYPHIRSDSHRMRRQEMLIDKSLSRVSFFLLCCVILCLLLF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4030g00011 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 117 IPR013083 -
Pral4030g00011 269 Pfam RING-type zinc-finger 56 101 IPR027370 -
Pral4030g00011 269 ProSitePatterns Zinc finger RING-type signature. 71 80 IPR017907 -
Pral4030g00011 269 SMART ring_2 56 103 IPR001841 -
Pral4030g00011 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 38 266 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pral4030g00011 269 MobiDBLite consensus disorder prediction 117 159 - -
Pral4030g00011 269 SUPERFAMILY RING/U-box 51 116 - -
Pral4030g00011 269 MobiDBLite consensus disorder prediction 143 159 - -
Pral4030g00011 269 ProSiteProfiles Zinc finger RING-type profile. 56 104 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4030g00011 Pral-Chr4030 43981 45886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4030g00011 28 255 C3H Transcription Factor Family AT4G27470 43.515 1.03e-49 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4030g00011 K10666 - qsa:O6P43_029094 250.751