Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4030g00010 ATGGAACCGGCGTGCTTTGACTGTAATGGGGGTGTCTCAAGGAGGAAAAATTTGAAATCAATTTCTTCACAGACTAGCACTGCTGATAGTGACCATGGTTGCTTTGAGTGCAACATATGTTTGGAGTCAGCTCATGATCCTGTGGTCACTCTGTGCGGTCACTTGTACTGCTGGCCTTGCATATTCAAGTGGCTTCAAGTTCAGGACTCTTCCGATGAATCAGACCAGCTGCAACCTACATGCCCAGTTTGTAAAGCCGATCTCTCTCATACTTCATTAGTCCCTCTTTATGGCAGAGGTGCGCATAGTTCGGATTCTGAGCCCAAGAAAACCCAGATGGATATAGGAATACCTCGTAGACCGCCTCCTCACACATCGAATGCTACCTTAAATTCTCCAAGTGCATCTACTTCTCAACTGGGTCAACTCCCAAGCTACTTCCAGTCGCAAACGCAGCAATACTTGCCTCACCTTTATGGAGGATATGCTATTAATAGAACACCATATCTTGGTGTTGCAGCCCTGACTAGTCTCTCCTATCCTATTATTGATATGTTCAGGGAAACGGTCTTTGCAGGGATCTTTGGGAGTTCCGGTTCTAATTCATTGGCGCATCGTTATGCCCGTTACTACCCTCATATTAGGAGTGACAGTCATAGAATGAGAAGGCAGGAAATGCTCATTGACAAGTCTCTGAGCAGAGTATCTTTCTTTCTCCTCTGTTGTGTCATTCTGTGTCTTCTCTTGTTTTGA 753 0.4529 MEPACFDCNGGVSRRKNLKSISSQTSTADSDHGCFECNICLESAHDPVVTLCGHLYCWPCIFKWLQVQDSSDESDQLQPTCPVCKADLSHTSLVPLYGRGAHSSDSEPKKTQMDIGIPRRPPPHTSNATLNSPSASTSQLGQLPSYFQSQTQQYLPHLYGGYAINRTPYLGVAALTSLSYPIIDMFRETVFAGIFGSSGSNSLAHRYARYYPHIRSDSHRMRRQEMLIDKSLSRVSFFLLCCVILCLLLF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4030g00010 250 Pfam RING-type zinc-finger 37 82 IPR027370 -
Pral4030g00010 250 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Pral4030g00010 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 98 IPR013083 -
Pral4030g00010 250 SUPERFAMILY RING/U-box 32 97 - -
Pral4030g00010 250 MobiDBLite consensus disorder prediction 124 140 - -
Pral4030g00010 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pral4030g00010 250 SMART ring_2 37 84 IPR001841 -
Pral4030g00010 250 MobiDBLite consensus disorder prediction 98 140 - -
Pral4030g00010 250 ProSiteProfiles Zinc finger RING-type profile. 37 85 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4030g00010 Pral-Chr4030 43801 45886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4030g00010 9 236 C3H Transcription Factor Family AT4G27470 43.515 5.81e-50 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4030g00010 K10666 - qsa:O6P43_029094 250.751