Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4028g00025 ATGATGGGTTGCGTTTGTTGCAAGCCCTCAGCCATTGACGACAGTAGGGAGAGTCCAAGGGAGCGATTATCAAATAAGGCTTCGTTGGACTCCCGTGGATCTAGGGCCACTTCGTCAAGGAGAGAGGATGGATATCGAGTGAAGGATAGATGCGATAGTACTGATGGTCGAACTGCATCCATGGATAAACAAGGAAATGGCTCTGTGCGTTTACAAGTTGATCATTTTGAAAGGAAGAGGGAGAAACCAGAGTATGTTATTGCACAGCATCCAGGACTTGGTAGCGTTCCAAAAGCCACAGAAGGGGAGCAGGTTGCAGCTGGGTGGCCTTCATGGTTGGCAGCGGTGGCTGGAGAGGCTATCAAGGGATGGTTGCCACGACGAGCAGATTCTTTTGAGAAGTTGGATAAAATTGGTCAGGGAACTTATAGCAATGTTTATAGGGCTCGTGATCTTGAGCATAAGAAAATTGTTGCTTTGAAAAAAGTGAGGTTCGATAATCTTGAACCTGAGAGTGTTCGTTTCATGGCAAGGGAAATTCACATTCTTCGTAGGCTTGATCATCCAAATGTTATAAAACTGGAAGGTCTAGTTACATCAAGGATGTCTTGCAGCCTATACCTTGTTTTTGAGTACATGGAACATGACTTGGCTGGGCTTGCTTCACATCCTGGACTAAAGTTTACTGAAGCGCAGGTCAAATGTTATATGCAGCAACTTCTACGTGGACTTGATCACTGCCATAGCTGTGGTGTACTGCACCGTGACATTAAGGGATCCAACCTTCTGATTGACAACAATGGAATCTTGAAGATTGCAGACTTTGGTTTGGCAAGCTTTTATAATCCCAATCAAATTCAGCCATTGACTAGTCGAGTTGTCACGCTCTGGTATCGTCCTCCAGAGCTTTTGCTTGGAGCAACTTACTATGGCGCTGCAGTTGATTTATGGAGTACAGGCTGCATACTTGCTGAGCTGTATGCTGGAAAGCCTATTATGCCAGGAAGAACTGAGGTTGAACAGTTACATAAAATTTTTAAACTTTGTGGCTCGCCTTCTGAGGATTATTGGAGGAAATCAAAGCTACCTCATGCAACAATATTTAAGCCCCAACAGCCCTACAGGCGGTGTGTTGGAGAAACATTTAAGGAGTTTCCTGCGCCTGCATTAGCACTTATGGAAACCCTTTTATCCATAGATCCTGCTGATCGTGGAACAGCAGCATCTGCTTTGAAGAGCGAGTTCTTCACCACAAAGCCCTTACCTTGTGATCCTTCAAGTTTGCCCAAGTATCCTCCGAGCAAGGAATTTGATGCCAAAGCACGGGATGAAGAAGCTAGAAGACAAGGAGCTCTTGGAAGCAAGGGCCATAGACAAGGGACAAGAGAGTCTCGGGCTGTCCCTGCTCCTGATGCTAATGCTGAACTGGTCCTATCCATGCAGAAGAGACAAGGTCAATCCAACTCTAAGAGCCGTAGTGAGAAGTTTAACCCTCATCCTGAAGAAGTTGCTTCAGGATTTCCCATCGATCCCCCTAGGCCATCACAGGCTGTGGAAGTAGGCATAGATCACCAGTTACAGCAACATAAAAGAGCTTCCCATTCAGGTCCACTTTGTAACCGCTCTGCATGGACAAAAGCTGGGAAAAACCCTGACGATGCCCCCAAGATCTCAAATGGGGGTGACTTGTCAGCAATGTCTGGCTTAGTTGCAGCAAGAAGAAGCATGTTATCTGATGATCGTAGAGAAAGGTCTGGATCATCACACACAGAGGTTCCAAAACTAATAAGCCGATTCCCAGGATCCATGAAGGAGGCCTCTGAGTCATTGATGCAACATGAACAGAAGCATGCTGGAGTCCCTCCTCCAAAGGAAGAAGGGAGAGGCAGCAACAAGGACCCAATTCCTGTTGGTTATGGGTCAAAGGGCCATAAAATTCATTATTCTGGTCCATTATTAGTCCCTTCTAGCAACACGGATCAGATGTTGAAGGACCACGATCGGCAAATTCAAGAAGTTGTCAGAAGAGCGCGATTGGACAAGGCGAAGATGAGAAGACTTCAGGCTGAAGGGAACCAGATGACAACCAATTCATTATTTGTTTCTGGTCGCTGA 2115 0.4605 MMGCVCCKPSAIDDSRESPRERLSNKASLDSRGSRATSSRREDGYRVKDRCDSTDGRTASMDKQGNGSVRLQVDHFERKREKPEYVIAQHPGLGSVPKATEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEHKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFYNPNQIQPLTSRVVTLWYRPPELLLGATYYGAAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVGETFKEFPAPALALMETLLSIDPADRGTAASALKSEFFTTKPLPCDPSSLPKYPPSKEFDAKARDEEARRQGALGSKGHRQGTRESRAVPAPDANAELVLSMQKRQGQSNSKSRSEKFNPHPEEVASGFPIDPPRPSQAVEVGIDHQLQQHKRASHSGPLCNRSAWTKAGKNPDDAPKISNGGDLSAMSGLVAARRSMLSDDRRERSGSSHTEVPKLISRFPGSMKEASESLMQHEQKHAGVPPPKEEGRGSNKDPIPVGYGSKGHKIHYSGPLLVPSSNTDQMLKDHDRQIQEVVRRARLDKAKMRRLQAEGNQMTTNSLFVSGR 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4028g00025 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Pral4028g00025 704 Pfam Protein kinase domain 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4028g00025 704 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Pral4028g00025 704 Coils Coil 670 690 - -
Pral4028g00025 704 Gene3D Phosphorylase Kinase; domain 1 119 214 - -
Pral4028g00025 704 MobiDBLite consensus disorder prediction 13 28 - -
Pral4028g00025 704 FunFam probable serine/threonine-protein kinase At1g54610 119 214 - -
Pral4028g00025 704 MobiDBLite consensus disorder prediction 9 65 - -
Pral4028g00025 704 CDD STKc_CDK9_like 132 416 - -
Pral4028g00025 704 Gene3D Transferase(Phosphotransferase) domain 1 215 454 - -
Pral4028g00025 704 MobiDBLite consensus disorder prediction 479 493 - -
Pral4028g00025 704 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4028g00025 704 MobiDBLite consensus disorder prediction 575 589 - -
Pral4028g00025 704 SUPERFAMILY Protein kinase-like (PK-like) 126 424 IPR011009 -
Pral4028g00025 704 MobiDBLite consensus disorder prediction 422 509 - -
Pral4028g00025 704 MobiDBLite consensus disorder prediction 435 464 - -
Pral4028g00025 704 PANTHER CELL DIVISION PROTEIN KINASE 130 422 - -
Pral4028g00025 704 MobiDBLite consensus disorder prediction 35 57 - -
Pral4028g00025 704 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4028g00025 704 MobiDBLite consensus disorder prediction 529 643 - -
Pral4028g00025 704 FunFam probable serine/threonine-protein kinase At1g54610 215 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4028g00025 Pral-Chr4028 240294 246201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4028g00025 124 448 Core Cell Cycle Gene Families AT5G10270 54.545 1.12e-119 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pral4028g00025 Pkinase 1.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4028g00025 - - gmx:100792173 1230.31