Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4028g00018 ATGATGGTGGTACCGAGACATTTCTTGATGAGTTTTCTCCAATGGGGGCTCTTGGCCTGCTTTCTTTGCTTATCTCTGGGTCTGAAAACCTCAACCCAATCCTGTGACTCTCGTGATGTGTTGGCTCTGAGGCAATTTGCTGGCAGCCTCACTAATGGGTCTATTATCGCATCATGGTCCACTGATATTGATTGCTGCAATTGGGTTGGAGTGGTCTGTGATAATTTGACTGATGAGACAACTGGTAATAGAGTGACCAAGTTGATTCTGCCTCAAATGGGTCTCAAAGGGGTAATTTCTACTTCTCTAGCGCAATTGGACCACTTAATTGTGCTGGATCTTTCGTTCAATCATCTCCAAGGTGCGTTGCCCTCAGAATTCTCCAAGTTGAAGCTGCTGAAATATCTGGATTTGAGCCATAATATGCTGTCAGGACCTGTTGCTGAAGCTCTTTCCGGCTTGCAGTCCATTCGGACACTGAACATTTCCAGCAATTCAATTAGTGGAAACCTCTCTGAGCTTGGGGAATTTCCTTATCTCGTTGCATTCAACATAAGCAACAATTCATTCAACGGTCAGTTCAATTCTCAAATTTGCAGTTCCTCTAAGGGGCTTCGCGTCCTTGATATATCTGCCAATCGCTTTGCTGGTGGTCTCGAAGGCTTGGGCAAATGTAACACATCTCTTCATGAGTTGCATTTGGATAATAATTTATTTTCAGGCCCTCTTCCGGATTCTCTGTACTCACTGTCAGCCTTGGAGCAACTCTCGGCGTCTGTGAACAATTTCTCTGGTCAGTTAAGCACGCAACTAAGTAAGCTCTCTAGCCTAAAGTCCATAGTAATTTCTGGCAACCAGTTTTCTGGGGTACTCCCAAATGTGTTTGGGAATTTGTCAGATTTAGAACAATTGGCAGCGCACTCCAATTTATTTTCTGGGTCATTGCCATCTAGCTTGGCTTTATGCTCAAAGCTTCGTGTGCTTGATCTTCGGAACAATTCTCTGGCGGGTGGAATTGATCTTGATTTTACTGGGTTGTCTAAACTCTGTAACCTTGATCTTGCGTCTAATCATTTTACTGGCCCTCTTCCAAACTCCTTGTCATATTGCCGTGAACTGAAAGTTTTGAGCCTTGCTAAGAATGGGTTGACAGGCTCAATTCCTGAAAACTATGCAAACCTTTCATCGCTGTTCTTTTTGTCTTTGTCAAACAACAGCTTAGAGAACTTATCTGGGGCCCTGTCTGTGCTGCAGCATTGTAAAAACCTCACTACAGTTATCCTCACAAAGAATTTCCATGGTGAGGAAATACCAAAAAGTATTTTGGGATTTGAGAGCCTAATGGTTTTAGCTCTGGGAAATTGTGGTCTCAAAGGCCAAGTACCTGCTTGGCTTTTGAATTGCAGCAAATTAGCAGTCCTTGATTTGTCTTGGAACCGTTTGGAAGGCAATATCCCTTCTTGGATTGGTAGGATGGACAATTTATTCTACCTGGATTTCTCAAACAATTCTTTCGTTGGAGAAATGCCAAAAAGTTTGACACAGTTGAAGGGTCTTGTATCCACAAATTGCACTAGGCCAAATCTGTCTGCATCAGCCGGTGTTCCTCTCTATGTCAAGAGAAACAAGAGTGCTAATGGGCTGCAATATAACCAGGCTTCAAGTTTCCCCCCTTCATTATTATTGAGCAATAACAGATTGAGTGGAGTGATATGGCCAGAAATTGGGCAACTCAAAGCACTGCATGTTTTGGATTTAAGCAGGAATGAAATCTCTGATACAATTCCTAGCAGCATTTCAGAGATGGAGAACTTGGAAACATTAGATCTGTCATATAATGATCTCTATGGAATGATCCCTCCATCGTTTAACAAGCTTACATTCTTGTCAAAGTTCAGCGTGGCATATAATCACTTGCAGGGACAAATTCCATCCGGGGGACAGTTTCTAAGCTTTCCTAGTACAAGTTTTGATGGCAACCCGGGACTTTGTGGTGGAATAATTTCTCAATGCAAAACCAACAATATGGGATGGAGGCCCAATATGCCTGCTGGTTCTTCCAGCAGATTTGGTAGAAACAATGTCCTTGGTATAACAATCAGTATAGGGGTAGGGCTTGCCCTGCTTCTTGCCATTGTTCTTCTGAAAGTATCAAAAAGGGATGAAGAGAAGCAGGTTGAAAACTTTGATGAGGAATTGGGTCGGCCCCCCAGGTTATCTGAAGGACTTGTTTCTTCAAAATTGGTTCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTGCGGATTTGTTGAAATCCACAAACAATTTTAACCAAGCAAACATTATTGGTTGTGGTGGGTTTGGTCTCGTTTACAAGGCAAATCTTCCAAATGGCACAAAAGCTGCAGTCAAGAGACTTTCTGGTGACTGTGGTCAGATGGAGCGTGAATTCCAAGCTGAAGTAGAGGCCCTTTCCAGAGCTCAGCACAAGAACCTTGTTTCTCTAAAAGGTTATTGCCGGCATGGCAATGTCAGATTGTTAATCTATTCCTACTTGGAGAATGGAAGTCTGGATTACTGGCTGCATGAGTGCGTGGATGAAAAATCAGCTTTGAAATGGGATGTGAGACTCAAGATTGCAAAAGGTGCTGCTCATGGATTAGCTTACTTGCATAAGGGGTGCGAGCCATTCATAGTTCATCGGGATGTCAAATCTAGCAATATACTTCTGGATGATAAATTTGAAGCTCATTTGGCTGATTTTGGCCTTTCAAGACTACTTCAGCCTTATGACACCCATGTTACAACAGACTTAGTGGGTACATTGGGATATATTCCGCCAGAGTATAGTCAGACATTGACAGCAACCTTCAGGGGTGATGTCTATAGCTTCGGTGTTGTTCTTCTCGAACTTCTTACTGGTAGAAGGCCGGTAGAAGTCATCAAAGGTAAAAACTGCAGGAACCTGGTGTCTTGGGTGTTTCAGATGAAATCAGAAAACAAGGAGCAAGAAATTTTCGACCCAGCCATTTGGGACAAGGATAATGAGAAGCAGCTCTTGGAGGTACTGGCCATTGCTTGTAGATGTTTGGACCAGGAACCAAGGCAAAGACCCTGTATTGAAGAAGTTGTTTCATCGCTCGATCGTGTAGGGGCTGATGGTTTGCAGCAGTGA 3159 0.4308 MMVVPRHFLMSFLQWGLLACFLCLSLGLKTSTQSCDSRDVLALRQFAGSLTNGSIIASWSTDIDCCNWVGVVCDNLTDETTGNRVTKLILPQMGLKGVISTSLAQLDHLIVLDLSFNHLQGALPSEFSKLKLLKYLDLSHNMLSGPVAEALSGLQSIRTLNISSNSISGNLSELGEFPYLVAFNISNNSFNGQFNSQICSSSKGLRVLDISANRFAGGLEGLGKCNTSLHELHLDNNLFSGPLPDSLYSLSALEQLSASVNNFSGQLSTQLSKLSSLKSIVISGNQFSGVLPNVFGNLSDLEQLAAHSNLFSGSLPSSLALCSKLRVLDLRNNSLAGGIDLDFTGLSKLCNLDLASNHFTGPLPNSLSYCRELKVLSLAKNGLTGSIPENYANLSSLFFLSLSNNSLENLSGALSVLQHCKNLTTVILTKNFHGEEIPKSILGFESLMVLALGNCGLKGQVPAWLLNCSKLAVLDLSWNRLEGNIPSWIGRMDNLFYLDFSNNSFVGEMPKSLTQLKGLVSTNCTRPNLSASAGVPLYVKRNKSANGLQYNQASSFPPSLLLSNNRLSGVIWPEIGQLKALHVLDLSRNEISDTIPSSISEMENLETLDLSYNDLYGMIPPSFNKLTFLSKFSVAYNHLQGQIPSGGQFLSFPSTSFDGNPGLCGGIISQCKTNNMGWRPNMPAGSSSRFGRNNVLGITISIGVGLALLLAIVLLKVSKRDEEKQVENFDEELGRPPRLSEGLVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKANLPNGTKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNVRLLIYSYLENGSLDYWLHECVDEKSALKWDVRLKIAKGAAHGLAYLHKGCEPFIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKSENKEQEIFDPAIWDKDNEKQLLEVLAIACRCLDQEPRQRPCIEEVVSSLDRVGADGLQQ 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4028g00018 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 893 905 IPR008271 GO:0004672|GO:0006468
Pral4028g00018 1052 SMART LRR_sd22_2 322 354 - -
Pral4028g00018 1052 SMART LRR_sd22_2 394 412 - -
Pral4028g00018 1052 SMART LRR_sd22_2 578 607 - -
Pral4028g00018 1052 SMART LRR_sd22_2 130 156 - -
Pral4028g00018 1052 SMART serkin_6 771 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4028g00018 1052 Gene3D Ribonuclease Inhibitor 371 675 IPR032675 -
Pral4028g00018 1052 FunFam Phytosulfokine receptor 1 735 846 - -
Pral4028g00018 1052 SUPERFAMILY Protein kinase-like (PK-like) 752 1042 IPR011009 -
Pral4028g00018 1052 ProSiteProfiles Protein kinase domain profile. 771 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4028g00018 1052 Gene3D Transferase(Phosphotransferase) domain 1 847 1047 - -
Pral4028g00018 1052 Pfam Protein kinase domain 772 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4028g00018 1052 PRINTS Leucine-rich repeat signature 602 615 - -
Pral4028g00018 1052 PRINTS Leucine-rich repeat signature 133 146 - -
Pral4028g00018 1052 Gene3D Ribonuclease Inhibitor 264 366 IPR032675 -
Pral4028g00018 1052 FunFam Leucine-rich repeat receptor-like protein kinase 847 1052 - -
Pral4028g00018 1052 Pfam Leucine Rich Repeat 324 344 IPR001611 GO:0005515
Pral4028g00018 1052 Pfam Leucine rich repeat N-terminal domain 38 74 IPR013210 -
Pral4028g00018 1052 SMART LRR_typ_2 106 129 IPR003591 -
Pral4028g00018 1052 SMART LRR_typ_2 274 297 IPR003591 -
Pral4028g00018 1052 SMART LRR_typ_2 394 417 IPR003591 -
Pral4028g00018 1052 SMART LRR_typ_2 346 370 IPR003591 -
Pral4028g00018 1052 SMART LRR_typ_2 602 625 IPR003591 -
Pral4028g00018 1052 SMART LRR_typ_2 130 153 IPR003591 -
Pral4028g00018 1052 SMART LRR_typ_2 578 601 IPR003591 -
Pral4028g00018 1052 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Pral4028g00018 1052 FunFam Leucine-rich repeat receptor-like kinase 38 155 - -
Pral4028g00018 1052 Pfam Leucine rich repeat 84 143 IPR001611 GO:0005515
Pral4028g00018 1052 Pfam Leucine rich repeat 559 615 IPR001611 GO:0005515
Pral4028g00018 1052 SUPERFAMILY L domain-like 59 335 - -
Pral4028g00018 1052 Gene3D Ribonuclease Inhibitor 34 263 IPR032675 -
Pral4028g00018 1052 SUPERFAMILY L domain-like 316 656 - -
Pral4028g00018 1052 FunFam Tyrosine-sulfated glycopeptide receptor 1 343 676 - -
Pral4028g00018 1052 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 296 1035 - -
Pral4028g00018 1052 Gene3D Phosphorylase Kinase; domain 1 740 846 - -
Pral4028g00018 1052 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 244 339 - -
Pral4028g00018 1052 ProSitePatterns Protein kinases ATP-binding region signature. 777 799 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4028g00018 Pral-Chr4028 118582 123197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4028g00018 38 1047 Receptor kinase-like Gene Family AT4G39400 35.039 3.44e-161 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Pral4028g00018 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4028g00018 - - gmx:100797812 1535.39