Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4028g00017 ATGGAGAGGAAGAAAACTTTAGTTGAGAAGGTAAGGAGGGATAACAACATAGTTGAAGAAGAAGAAGTAGAGGATGAGATAGAAGAGGAAGAAGAAAGCGGTGGTGGAGGTGATGGCGGAGTTGTAGAAGAGCAGAAGAGGAAAGGTTTCATGGGAAGTGGAAGAAGAGGGTCAAGTGGATGTGGCGGAGTTTCTCCACCTTCCTGTCAGGCAGAGAGGTGTGGAGCTGATCTGAGTGATGCAAAGCGGTACCATCGCCGCCATAGGGTGTGTGAGTTCCACTCCAAGGCACCAGTTGTCATGGTTGCAGGACTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCACGACTTGGGGGAATTTGATGAAGCCAAGAGAAGCTGCCGAAGGCGCTTGGCTGGGCACAATGAACGTCGCCGCAAAAGCACTGGTGAGATTTACAACGAGAGCTGCAACCGTGGCAAAGGTCACCACACAAAGGAGAGCCATTGCAGACATGCTGATGATAGAGGAAGGGTTCAAATGAGCGTTTCTGGGAGTTCTGGCTACAAATCTTTTCACATAAAATAA 573 0.4939 MERKKTLVEKVRRDNNIVEEEEVEDEIEEEEESGGGGDGGVVEEQKRKGFMGSGRRGSSGCGGVSPPSCQAERCGADLSDAKRYHRRHRVCEFHSKAPVVMVAGLRQRFCQQCSRFHDLGEFDEAKRSCRRRLAGHNERRRKSTGEIYNESCNRGKGHHTKESHCRHADDRGRVQMSVSGSSGYKSFHIK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4028g00017 190 Gene3D - 60 130 IPR036893 GO:0003677|GO:0005634
Pral4028g00017 190 MobiDBLite consensus disorder prediction 139 173 - -
Pral4028g00017 190 Pfam SBP domain 69 142 IPR004333 GO:0003677
Pral4028g00017 190 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Pral4028g00017 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 168 IPR044817 GO:0003677
Pral4028g00017 190 MobiDBLite consensus disorder prediction 134 190 - -
Pral4028g00017 190 FunFam Squamosa promoter-binding-like protein 14 61 130 - -
Pral4028g00017 190 SUPERFAMILY SBT domain 67 147 IPR036893 GO:0003677|GO:0005634
Pral4028g00017 190 MobiDBLite consensus disorder prediction 1 63 - -
Pral4028g00017 190 Coils Coil 1 33 - -
Pral4028g00017 190 MobiDBLite consensus disorder prediction 1 18 - -
Pral4028g00017 190 MobiDBLite consensus disorder prediction 19 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4028g00017 Pral-Chr4028 108943 110561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4028g00017 54 146 SBP-box Gene Family AT1G53160 72.043 1.25e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4028g00017 SBP 8.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4028g00017 - - aprc:113864686 243.817