Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4028g00004 ATGGCTCCTAGGGATGGACCCGCCGCTCTCGCCGCCTCCAATCCGGCCCACACTGCCAAGGAGATCCGATACAGAGGTGTTCGCAAGAGGCCGTGGGGGCGTTACGCCGCTGAGATTCGTGATCCCGGCAAGAAAACCCGTGTTTGGCTTGGCACTTTTGATACGGCGGAAGAGGCGGCGCGTGCCTACGACGCGGCGGCTAGGGAGTTCCGTGGCGCGAAGGCCAAGACTAATTTCCCGTGTCCGTCTGAACTTCCGATGAACAACTTCAGTCGCAGCCCTAGCCAGAGCAGCACGCTTGAATCGTCATCGCCGCCGCCGCCGCCAGTTGCTCCTCCACCGCTGGAACTCTCCCTTGGGACGTACACTTCCGGCGGTGCTTTGGGGTTCCCGGTCATTCCTGTAGCTCGCCCGGTGATGTTTTTTGACGCGTTTGCTCGGGCGGACAGCATGATGGCAGCTGCCGGCCGTCGTGAGATGTGCGGCTTTGAACGGCCTTTTCTGGAGTTCCGCCGCTCCGCCGGCGATGGCGGTGCCCACAGTGACTCTGATTCGTCCTCCGTGGTGGACTACGAGCGTGGCTCGCCTCGCACAGTCTTAGATCTTGACCTCAACGTTCCTCCTCCGGCGGAGGTTGCCTGA 642 0.6215 MAPRDGPAALAASNPAHTAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPCPSELPMNNFSRSPSQSSTLESSSPPPPPVAPPPLELSLGTYTSGGALGFPVIPVARPVMFFDAFARADSMMAAAGRREMCGFERPFLEFRRSAGDGGAHSDSDSSSVVDYERGSPRTVLDLDLNVPPPAEVA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4028g00004 213 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Pral4028g00004 213 MobiDBLite consensus disorder prediction 173 213 - -
Pral4028g00004 213 MobiDBLite consensus disorder prediction 81 117 - -
Pral4028g00004 213 MobiDBLite consensus disorder prediction 101 115 - -
Pral4028g00004 213 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Pral4028g00004 213 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Pral4028g00004 213 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Pral4028g00004 213 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 156 - -
Pral4028g00004 213 FunFam Ethylene-responsive transcription factor 2 23 81 - -
Pral4028g00004 213 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Pral4028g00004 213 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Pral4028g00004 213 MobiDBLite consensus disorder prediction 82 100 - -
Pral4028g00004 213 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Pral4028g00004 213 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4028g00004 Pral-Chr4028 46103 47179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4028g00004 11 143 AP2-EREBP Transcription Factor Family AT3G15210 65.517 3.85e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4028g00004 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4028g00004 K09286 - qsa:O6P43_029132 204.527