Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4028g00002 ATGGAGAGCTATTACCCCTCCGACAACAATGATGCTCATTTGCCTCCCGGCTTTCGCTTCCACCCCACAGACGAAGAACTCATCACGTACTACCTCCTCAAGAAAGTCCTTGACAATAGCTTCACTGGTAGAGCCATAGCTGAAGTTGATCTCAACAAATGTGAGCCATGGGAGCTTCCAGAGAAAGCGAAGATGGGAGAGAAGGAGTGGTACTTCTTTAGCTTGAGAGATAGGAAGTACCCAACTGGGCTAAGAACTAATAGGGCTACAGAAGCAGGATACTGGAAGGCCACTGGGAAAGACAGAGAAATCTACAGCTCAAAGACTAGCGCTTTAGTGGGGATGAAGAAGACTCTTGTGTTTTACAGAGGAAGAGCTCCAAAAGGCGAGAAGAGCAACTGGGTTATGCACGAGTATCGCCTTGAAGGCAAATTTGCCTACCATTACCTCTCTCGCTCCTCCAAGGATGAGTGGGTCATTTCCCGGGTGTTCCAGAAGAGTGGCTCCGGCAACGGCGGCTCCGCCACCATATCGTCATCTTGCAGTGGCTCGAAGAAGACCCGAAACATCATGAGCTCTTCTTCTAACTTGAGTCTCTACACAGCTGAGCCCAGTTCTCCCTCCTCCGTTTACCTTCCGCCTCTACTTGATTCCTCACCGTTCACGGCCGCCGCCGCCAGTAGCACCGCCGCAGTCAACGATCGTGACAGTTGCTCTAACACTTACGACAGCCTGAATACCTCAAGAGAGCACGTGTCCTGTTTCTCCACAATCTCTGCCGCCGCCAGCAACAACTACAGCTTTGACCTGTCCGCCGCGCCGCTGTCTGTTACGGTGGACCCCTTGGCTCGTTTTCAGAGAAACGGGGGCATTTCCTTCCCAAGCCTGAGGGCGCTGCATCTGCAAGACAACCTTCAGCTTCCCTTCCTTATCCCGCCCCCGCCGCCGCCGCAGCAGCAGCAGCCCTTCCAGGGCGTTCCCGTCAACATGAATTGGATTACACCGGTTGACGATCAGAGGGTGGCGGACGTTAGCTCCGGCATGACCAGTTTGGGTGGCTCCGAGCTTGATTGCATGTGGGGATTCTAA 1089 0.5354 MESYYPSDNNDAHLPPGFRFHPTDEELITYYLLKKVLDNSFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTSALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKSGSGNGGSATISSSCSGSKKTRNIMSSSSNLSLYTAEPSSPSSVYLPPLLDSSPFTAAAASSTAAVNDRDSCSNTYDSLNTSREHVSCFSTISAAASNNYSFDLSAAPLSVTVDPLARFQRNGGISFPSLRALHLQDNLQLPFLIPPPPPPQQQQPFQGVPVNMNWITPVDDQRVADVSSGMTSLGGSELDCMWGF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4028g00002 362 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
Pral4028g00002 362 FunFam NAC domain-containing protein 100-like 23 170 - -
Pral4028g00002 362 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Pral4028g00002 362 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Pral4028g00002 362 SUPERFAMILY NAC domain 11 166 IPR036093 GO:0003677|GO:0006355
Pral4028g00002 362 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4028g00002 Pral-Chr4028 15043 16936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4028g00002 4 362 NAC Transcription Factor Family AT5G53950 52.756 2.20e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral4028g00002 NAM 2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4028g00002 - - pcin:129313031 620.542