LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4025g00017	ATGGGAAATCAAAAGCATAAGTGGACCGCCGAGGAAGAAGAAGCTTTGCTCGCTGGCATTGGGAAGCATGGCCCCGGCAAGTGGAAGAATATCCTCAAAGATCCCGAGTTTGCCCCTTTTCTCACTCACCGTTCCAACATCGATCTTAAGGATAAATGGCGAAATTTAAGTGTCAGTACTTCAGCTCAGGGATCTAAAGAAAAAGCTAGGAACCCGAAGACTAAAACTACGGAACCTGCTACACCTGCGGGCACGCAAAATGCTTCTGTTGCTCCTCCACTTCGTCAATGTGCAGCTTCTGATGCCGTCGCAGATGATTCATCTCACAATGCACAGGATGTCAAACATGCTCCCCAGTACAATGCAATGATTTTTGAGGCCCTATCAATGATAAAAGATTCCAATGGATCTGACCTAAACGCTATTGTTAGTTTCATTGAGCAAAAGCATGAGGTTCCCCAAAATTTCAGACGAGCAGTAGGTGCAAGGTTGAGGAAGCTTGTTGATCAAGGAAAACTTGAAAAGGTACAAAATTGTTACAAGATAAAGAGAGCGACGCCTCCTGAGACAAAACCACCTGCTCCAAAACCAAACGATTCCAGGCCACGTCAATCACCAGCGTCTGGATTTACGGCATCTCAAGAGACAGTGATGGATGCTGCGGAGATTGCGGCATACAGAATAGCTGAAGCAGAGCACAAATCACATTGGGCTGCTGAAGCAATCAAGGAGGCAGAAAAATTCTCGAAGTTGGCCGAAGACGCTGATGCAATGTTACAGCTAGCGAAGGAGATTTATGACCAATGTTCACGGGGTGAAATCATACTGCTGGCTTAA	837	0.46	MGNQKHKWTAEEEEALLAGIGKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTSAQGSKEKARNPKTKTTEPATPAGTQNASVAPPLRQCAASDAVADDSSHNAQDVKHAPQYNAMIFEALSMIKDSNGSDLNAIVSFIEQKHEVPQNFRRAVGARLRKLVDQGKLEKVQNCYKIKRATPPETKPPAPKPNDSRPRQSPASGFTASQETVMDAAEIAAYRIAEAEHKSHWAAEAIKEAEKFSKLAEDADAMLQLAKEIYDQCSRGEIILLA	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4025g00017	278	Pfam	Myb-like DNA-binding domain	6	56	IPR001005	-
	Pral4025g00017	278	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	61	IPR017930	-
	Pral4025g00017	278	MobiDBLite	consensus disorder prediction	52	92	-	-
	Pral4025g00017	278	SMART	h15plus2	114	179	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Pral4025g00017	278	ProSiteProfiles	Linker histone H1/H5 globular (H15) domain profile.	116	184	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Pral4025g00017	278	SUPERFAMILY	"Winged helix" DNA-binding domain	116	196	IPR036390	-
	Pral4025g00017	278	MobiDBLite	consensus disorder prediction	52	67	-	-
	Pral4025g00017	278	PANTHER	SINGLE MYB HISTONE 4	1	277	IPR044597	GO:0003691
	Pral4025g00017	278	SMART	sant	4	59	IPR001005	-
	Pral4025g00017	278	MobiDBLite	consensus disorder prediction	75	92	-	-
	Pral4025g00017	278	SUPERFAMILY	Homeodomain-like	2	58	IPR009057	-
	Pral4025g00017	278	MobiDBLite	consensus disorder prediction	182	214	-	-
	Pral4025g00017	278	Gene3D	-	8	81	-	-
	Pral4025g00017	278	FunFam	Telomere repeat-binding factor 1	2	58	-	-
	Pral4025g00017	278	Pfam	linker histone H1 and H5 family	118	177	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Pral4025g00017	278	Gene3D	-	112	196	IPR036388	-
	Pral4025g00017	278	FunFam	Telomere repeat-binding factor 1	8	87	-	-
	Pral4025g00017	278	ProSiteProfiles	Myb-like domain profile.	1	57	IPR001005	-
	Pral4025g00017	278	CDD	SANT_TRF	6	56	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4025g00017	Pral-Chr4025	240059	243104	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4025g00017	1	277	Single Myb Histone (SMH) Gene Family	AT1G17520	49.310	1.25e-84	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Pral4025g00017		Linker_histone	4.9e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4025g00017	K09422		-	jre:109002017	360.147