Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4008g00008 ATGGGCGATTATTGGTGCAGTGATGATGACGATTATAATTACTCCGATGAGGGTTCCATGGACGAAGGCCTCGAAGACGACGACGACGATGCCGATATTATGGCCGAGGGTCCCAAAACCATGGTGATCACAAGAGAATCACTTGTCGCTGCTCAGAAAGAAGATCTGCGCCGAGTAATGGAAATGCTTTCGCTGAGGGAACACCACGTTCGTACTCTTCTTATTCATCATCGTTGGGATGTGGATAAGCTTTTTGCGGTATATGTTGAAAAGGGAAAATCTGCCTTGTTTGCTGAAGCCGGTGTTACTGTGTACGAACCTTCGGGTTCTGGTTCTGATTCTGATCCATCATCATCATCATCAGTTCCTTCTTTAATCTTTTGTGAAATCTGCATGGAAAATGTTCCCAGAAATGATGTAACAAGAATGGACTGTGGTCACTGTTTCTGCAACGATTGCTGGACAAGCCACTTTATCGTTAAAATAAATGACGGCCAAAGCAAGAGCATAACTTGCATGGCGGACAAATGTAACGCTATTTGTGATGAATATATTGTCAGAGATCTGGTGGGTAAAGAGCATCCGGAAACGGCAGAGAAATTCGATCGGTTTCTTCTTGAATCTTACATTGAAGATAACAAAAGAGTTAAATGGTGTCCTAGCGTTCCTCATTGTGGGAATGCAATTCGTGCAGAGGAAGATGAACTATGTGAATTGGAATGTTCTTGTGGTGTCCAGTTCTGTTTTAACTGCTTATCAGAGGCACATTCGCCTTGTTCTTGTTTGATGTGGGAGCGATGGTCGATCAAATGTAGAGATGAATCAGAAAATGTAAACTGGATCACAGCTCACACAAAACCTTGTCCTAAATGCAGCAAACCAGTGGAGAAGAACGGTGGCTGCAATTTGGTTTGTTGTATTTGTGGTCAAGCATTTTGCTGGATCTGTGGCGGAGCCACTGGACGAGATCATACTTGGTCATCTATAAGCGGCCATAGTTGTGGTCGCTACAAGCCACAAGAGAAACTAGCAGAACTTGCCAAGCAAAATCTGTATCGTTACATGCATTATCATAATCGATACAAAGCTCACACAGACTCATTAAAGCTTGAAAGTAAGTTGAAAGAGACTATGCAGGAGAAGGTTGATCTTTCGGAGGAGAAGATCAATGATTCAACACTGAGAGATTATAGCTGGGTGGGTAATGGACTCTCAAGACTTTTCAGATCGAGGCGAGTGCTATCTTATTCGTACCCATTTGCATATTATATGTTTGGAGGTGAGATGTTCATGGAAAAGATGTCAGAAGAGGAAAGGGAAAGAAAGCAGAACTTGTTTGAGGATCAGCAGCAGCAGCTGGAGGCCAATGTTGAGAAGCTCTCAAAGTTTCTGGAGGAACCCTTTGATCGGTTTGAAGATGAGAAAGTAATGAATATAAGGAATCAAGTTCTTAACTTCTCAGCCATTGTTGATCATCTGTGCCAGGAAATGTATGGGTGCATTGAGAATGATTTATTGGGTTCTCTTCATCATAGGATTGCTCCTTACAAATCAAAGGGCATAGAGAAGGCATCTAAACTTTCAGCTTCTTCGTAA 1596 0.4242 MGDYWCSDDDDYNYSDEGSMDEGLEDDDDDADIMAEGPKTMVITRESLVAAQKEDLRRVMEMLSLREHHVRTLLIHHRWDVDKLFAVYVEKGKSALFAEAGVTVYEPSGSGSDSDPSSSSSVPSLIFCEICMENVPRNDVTRMDCGHCFCNDCWTSHFIVKINDGQSKSITCMADKCNAICDEYIVRDLVGKEHPETAEKFDRFLLESYIEDNKRVKWCPSVPHCGNAIRAEEDELCELECSCGVQFCFNCLSEAHSPCSCLMWERWSIKCRDESENVNWITAHTKPCPKCSKPVEKNGGCNLVCCICGQAFCWICGGATGRDHTWSSISGHSCGRYKPQEKLAELAKQNLYRYMHYHNRYKAHTDSLKLESKLKETMQEKVDLSEEKINDSTLRDYSWVGNGLSRLFRSRRVLSYSYPFAYYMFGGEMFMEKMSEEERERKQNLFEDQQQQLEANVEKLSKFLEEPFDRFEDEKVMNIRNQVLNFSAIVDHLCQEMYGCIENDLLGSLHHRIAPYKSKGIEKASKLSASS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4008g00008 531 CDD BRcat_RBR_ANKIB1 206 270 - -
Pral4008g00008 531 FunFam RBR-type E3 ubiquitin transferase 257 506 - -
Pral4008g00008 531 Coils Coil 367 387 - -
Pral4008g00008 531 CDD RING-HC_RBR_TRIAD1 128 179 - -
Pral4008g00008 531 Pfam IBR domain, a half RING-finger domain 199 261 IPR002867 GO:0008270
Pral4008g00008 531 FunFam RBR-type E3 ubiquitin transferase 123 213 - -
Pral4008g00008 531 ProSiteProfiles TRIAD supradomain profile. 124 338 IPR044066 -
Pral4008g00008 531 SUPERFAMILY RING/U-box 199 268 - -
Pral4008g00008 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 213 IPR013083 -
Pral4008g00008 531 CDD Rcat_RBR_ARI1-like 282 335 - -
Pral4008g00008 531 ProSiteProfiles Zinc finger RING-type profile. 128 176 IPR001841 -
Pral4008g00008 531 SMART ibrneu5 269 334 IPR002867 GO:0008270
Pral4008g00008 531 SMART ibrneu5 199 261 IPR002867 GO:0008270
Pral4008g00008 531 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 55 418 IPR031127 GO:0004842|GO:0016567
Pral4008g00008 531 MobiDBLite consensus disorder prediction 1 28 - -
Pral4008g00008 531 Pfam Ariadne domain 340 530 IPR045840 -
Pral4008g00008 531 SUPERFAMILY RING/U-box 280 322 - -
Pral4008g00008 531 SUPERFAMILY RING/U-box 124 211 - -
Pral4008g00008 531 Gene3D - 257 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4008g00008 Pral-Chr4008 274750 276507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4008g00008 60 530 ARIADNE family AT2G16090 69.053 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4008g00008 K11968 - pcin:129295375 806.594