Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4004g00002 ATGGTCTCCAAAACAGAGGCAAATATGGCTTCGCTGCTACCATACGGCGACGTTGATTTCAGCCTGAGGGCAATGGCGGGTCGCGCTGAGGGATTTGGTTGCAACTCCATCGGTGGCCTCCACGGCCCTCTCTATTTCGTCACCACCGTCGCTGATGATGGTCCTGGATCCCTTCGGGATGGATGTCGTAGAAAAGAGCCACTCTGGATTGTTTTTGAAGTATCAGGTACCATTCATCTTTCATCATACTTGAATGTATCATCTTACAAGACAATAGATGGCCGAGGCCAGAGTATAAAGCTCACAGGAAAGGGCTTAAGGCTGAAAGAATGTGAGCATATAATCATATGCAACCTTCAGTTTGAAGGAGGTAGGGGTCATGATGTTGATGGCATTCAAATAAAACCAAACTCTAGGCACATATGGATAGATCGCTGCAGTCTTCGTGATTATGATGATGGGCTTATAGACATTACAAGACAAAGCACAGATATTACTGTATCGAGATGTTACTTTGCCCAGCATGATAAGACCATGCTCATTGGAGCTGACCCATCTCACATTGGCGATAGATGCATACGGGTGACAATTCATCACTGTTTCTTTGACGGGACACGACAAAGACAACCTCGTGTTAGATTTGGAAAAATCCATCTGTACAACAACTACACCAGAAACTGGGGTTTATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTCAGTGCAACATTTATGAAGCAGGAACTAAGAAAAAGACCTTTGAATTCTATACGGAGAAGGCTGCAGATAAGGAAGAGCAGAAATCTGGCACCATAATATCTGAAGGAGACATATTTCTGAATGGTGCGGAATCATGCTTACAAACACAACACACAGAAGGAAGCATTTTCCACCCTTCTGAATATTATACAACTTGGACTATGGAAGCACCCTCACATTCTTTTAAAGGTGTTCTCCAGATATGTGCAGGTTGGCAATCTGTTTGTCGGCCGGCAGAAGTCTCTTCTTGTTTGAATTAG 1026 0.4386 MVSKTEANMASLLPYGDVDFSLRAMAGRAEGFGCNSIGGLHGPLYFVTTVADDGPGSLRDGCRRKEPLWIVFEVSGTIHLSSYLNVSSYKTIDGRGQSIKLTGKGLRLKECEHIIICNLQFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRQPRVRFGKIHLYNNYTRNWGLYAVCASVESQIYSQCNIYEAGTKKKTFEFYTEKAADKEEQKSGTIISEGDIFLNGAESCLQTQHTEGSIFHPSEYYTTWTMEAPSHSFKGVLQICAGWQSVCRPAEVSSCLN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4004g00002 341 PANTHER PECTATE LYASE 18-RELATED 23 297 IPR045032 GO:0030570
Pral4004g00002 341 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Pral4004g00002 341 PRINTS Pollen allergen Amb family signature 28 45 IPR018082 -
Pral4004g00002 341 PRINTS Pollen allergen Amb family signature 208 227 IPR018082 -
Pral4004g00002 341 SMART amb_all 55 253 IPR002022 -
Pral4004g00002 341 Pfam Pectate lyase 83 246 IPR002022 -
Pral4004g00002 341 Gene3D - 17 322 IPR012334 -
Pral4004g00002 341 SUPERFAMILY Pectin lyase-like 26 329 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4004g00002 Pral-Chr4004 9752 13692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4004g00002 50 335 Polysaccharide Lyase AT3G55140 80.070 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4004g00002 K01728 - gmx:100802068 597.43