Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3998g00002 ATGGGGAGACAACCTTGCTGTGACAAACTTGAAGTGAAGAAAGGGCCGTGGACTGCTGAAGAAGACAAGAAGCTCATCAACTTCATTCTCACTAATGGTCACTGTTGCTGGCGAGCCGTTCCAAAGCTCGCTGGCCTCAGGCGATGTGGCAAGAGTTGCAGGCTTCGTTGGACTAACTACCTTCGTCCTGACTTGAAGCGAGGCCTCCTCACTGATGCAGAAGAGAAACTTGTCATAGATCTCCATTCTTGCCTTGGCAACAGGTGGTCTATGATAGCTGCAAAATTACCAGGAAGAACAGACAATGAGATTAAAAATCATTGGAACACCCACATCAAGAAGAAGCTGCTTAAGATGGGTATTGATCCTGTTACTCACGAGCCTCTCAACAAAGAAATTGCTTCTCAGGATAAAAGTTCATCCCCTGCAGAGCATTTGTCACAATCTGACAGTGACAATAATCATCAGGGGAATGTTCTTAACTCAAAGGAGAATTCAATCTCGTCATCAACTGAAAATTCATGTGGGGATGAACCACTTCTGCAAGAAATCAACCTCTCCAACAACTTGTGGCTGGAAGAAACTTCACTGGTGGATGCATTATGGGAAAGTATACCTGATGCACAGAATGCGAATTATGACTCGGCACTTTCATCTTGGGAGGATACTAGTTCCTGGTTATTGGGCTCTCTGGACTTTGGTTTTAATTGCTTCAATGAGATTGAGCCTCATGCCCTTCAGGCGTTAGGAATGGAGGAGAAGGAACATTAG 771 0.4488 MGRQPCCDKLEVKKGPWTAEEDKKLINFILTNGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTDAEEKLVIDLHSCLGNRWSMIAAKLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKEIASQDKSSSPAEHLSQSDSDNNHQGNVLNSKENSISSSTENSCGDEPLLQEINLSNNLWLEETSLVDALWESIPDAQNANYDSALSSWEDTSSWLLGSLDFGFNCFNEIEPHALQALGMEEKEH 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3998g00002 256 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pral3998g00002 256 CDD SANT 16 61 IPR001005 -
Pral3998g00002 256 MobiDBLite consensus disorder prediction 133 174 - -
Pral3998g00002 256 SMART sant 66 114 IPR001005 -
Pral3998g00002 256 SMART sant 13 63 IPR001005 -
Pral3998g00002 256 FunFam MYB transcription factor 70 147 - -
Pral3998g00002 256 Gene3D - 11 67 - -
Pral3998g00002 256 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral3998g00002 256 FunFam MYB transcription factor 11 67 - -
Pral3998g00002 256 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Pral3998g00002 256 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral3998g00002 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral3998g00002 256 PANTHER F14D16.11-RELATED 1 189 - -
Pral3998g00002 256 CDD SANT 71 112 IPR001005 -
Pral3998g00002 256 Gene3D - 71 116 - -
Pral3998g00002 256 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral3998g00002 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral3998g00002 256 MobiDBLite consensus disorder prediction 134 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3998g00002 Pral-Chr3998 35528 36814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3998g00002 1 248 MYB Transcription Factor Family AT4G12350 54.770 4.97e-93 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3998g00002 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3998g00002 K09422 - gmx:100800360 383.259