Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3997g00002 ATGAGAACGCTTTGTGACGCTTGTGAGAGCGCCGCCGCTATCGTTTTCTGCGCCGCCGATGAGGCCGCTCTCTGCCGTGCCTGTGACGAGAAGGTTCATATGTGTAACAAGCTAGCTAGCCGACATGTAAGGGTTGGTCTGGCCAGTCCTAGTGATGTGCCTCGCTGTGACATATGTGAAAATGCGCCTGCATTCTTCTATTGCGAGACAGATGGAAGTTCACTTTGCTTGCAGTGTGACATGATGGTTCATGTTGGCGGCAAAAGAAAACATGGAAGGTATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAAACTGGTCTTCCAGAAAACTCAGCTTCACTGCCTTTGGAACCTGGTGAGACTAAAAGAGGACAAAATCCTCTGCCTAAAGTAAAAGTGGGAGAGAGAAAACAAAATCATAGGTTAGCCGTGGTTGCAGCACCTGAACATGATGCTGACAGCCATGCCATGATGGGAACTAACATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAACAAGCTTCCAATAATCAGGTCAGATTGCATAAGAAGTCAATTTTCTCCGGCTAG 585 0.465 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMMVHVGGKRKHGRYLLFRQRVEFPGDKTGLPENSASLPLEPGETKRGQNPLPKVKVGERKQNHRLAVVAAPEHDADSHAMMGTNMIDLNMKPQRIHEQASNNQVRLHKKSIFSG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3997g00002 194 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Pral3997g00002 194 Pfam B-box zinc finger 52 91 IPR000315 GO:0008270
Pral3997g00002 194 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pral3997g00002 194 SMART bboxneu5 51 96 IPR000315 GO:0008270
Pral3997g00002 194 CDD Bbox1_BBX-like 56 96 - -
Pral3997g00002 194 MobiDBLite consensus disorder prediction 107 131 - -
Pral3997g00002 194 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pral3997g00002 194 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Pral3997g00002 194 CDD Bbox1_BBX-like 4 47 - -
Pral3997g00002 194 Gene3D Classic Zinc Finger 2 92 - -
Pral3997g00002 194 FunFam B-box zinc finger protein 19 2 92 - -
Pral3997g00002 194 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 140 - -
Pral3997g00002 194 SUPERFAMILY B-box zinc-binding domain 48 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3997g00002 Pral-Chr3997 14596 17466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3997g00002 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.202 2.77e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pral3997g00002 zf-B_box 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3997g00002 - - pcin:129311612 360.533