Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3995g00010 ATGGAGTGCGAAGCTGCTTTCAAAACCAGTTCTCGCATGGACGCTGGCCTCAAATTCAGCCCCCGTGCGTTTCTCGAGGAGTTGTCCGCCTCCAATGTGCAGAATCTCACCCCTTCCGATCAGTTCTTTGTGGACGGCCTTCTTGACTTCTCCCACCACGACGCCCTCCCCGAGCAGCCGGACCAGCCACAACAACCCCTCCATGATTCTCTTCCTGTTTCTCCTCGCCTGCTCAACAAAACTCCTAAAACTTCTTCCGTCACGGACGATTTCGCCTCTGCCCAACTCATCCTTCCGGCGGATGAAGAAGCAGACTTGGAGTGGCTCTCTCATTTCGTCGAGGATTCCTTCTTCGAATACTCCGCTCCGTACCCTGCCGGAACATTGCCGGGAATTCCGAAGACCGAGACAGAGAAAGTACTTGAATTTGAAACCCCTGTTGCGGCCTCGCCCTGTTTCCCGACCCCAGTTCCTGCCAAGGCCAGAAGCAAACGAACACGAACCGGATTGCGGGTTTGGTCACTGGGCTTTCCTCCTATCACCGAGTCGTCATCCTCAACTTCTTCGTCATCCTCCTCTTCTTCGTCTCCTTTGCTAATTTATAATAACAGTGTCTCTAATCCGCAGCTCATCGGCTTCGAAGCAAAGTCACCGAGCGTGAACAAACTAAAAAGGAGGACGGCTGATGAGGCGGCTGAGGGAGTGGCCGCTTCGACACCGCGGAAGTGCAGTCACTGCGGCGTGCAGAAGACCCCACAGTGGCGGACCGGACCGCTCGGAGCAAAAACGCTATGTAACGCGTGTGGGGTACGATATAAATCCGGCCGACTCTTGCCTGAATACAGACCCGCTTGTAGCCCGACATTCTCGAGCGAATTACACTCGAATCACCACCGGAAAGTGCTGGAGATGCGGCGGGAGAAGGAGATGAGCGAGATGGGGTCGGGTTTGGAGCCTCCGACTGTGGTCCCCAGTTTTTGA 981 0.5515 MECEAAFKTSSRMDAGLKFSPRAFLEELSASNVQNLTPSDQFFVDGLLDFSHHDALPEQPDQPQQPLHDSLPVSPRLLNKTPKTSSVTDDFASAQLILPADEEADLEWLSHFVEDSFFEYSAPYPAGTLPGIPKTETEKVLEFETPVAASPCFPTPVPAKARSKRTRTGLRVWSLGFPPITESSSSTSSSSSSSSSPLLIYNNSVSNPQLIGFEAKSPSVNKLKRRTADEAAEGVAASTPRKCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRREKEMSEMGSGLEPPTVVPSF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3995g00010 326 PANTHER GATA TRANSCRIPTION FACTOR 31 311 - -
Pral3995g00010 326 Gene3D - 235 311 IPR013088 GO:0006355|GO:0008270
Pral3995g00010 326 MobiDBLite consensus disorder prediction 53 85 - -
Pral3995g00010 326 Pfam GATA zinc finger 243 277 IPR000679 GO:0006355|GO:0043565
Pral3995g00010 326 PIRSF Txn_fac_GATA_plant 11 319 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pral3995g00010 326 ProSiteProfiles GATA-type zinc finger domain profile. 237 273 IPR000679 GO:0006355|GO:0043565
Pral3995g00010 326 SMART GATA_3 237 291 IPR000679 GO:0006355|GO:0043565
Pral3995g00010 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 299 - -
Pral3995g00010 326 CDD ZnF_GATA 242 290 IPR000679 GO:0006355|GO:0043565
Pral3995g00010 326 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355|GO:0043565
Pral3995g00010 326 FunFam GATA transcription factor 233 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3995g00010 Pral-Chr3995 45567 47407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3995g00010 4 326 C2C2-Gata Transcription Factor Family AT5G66320 49.706 5.78e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral3995g00010 GATA 4.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3995g00010 - - qsa:O6P43_033646 332.028