Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3995g00005 ATGGGTCGGGGAAAGATTGAGATCAAGTTGATCGAGAATGCCACCAACAGGCAGGTCACCTACTCCAAACGGCGCAATGGCATTTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTTTCCCTCATCATGTTCTCCAAAAACAATAAGATGCATGAATACACCACTCCTGGCCTAACGACAAAGAATATAATAGATCAGTACCAGAGGACTTTGGGGAATATCGATCTCTGGAGTGCCCAATATGAGAGGATGCTCGAAAACATGAAGAAGCTGAAAGAGACTAACAATAAACTCAGAAGACAGATAAGGCAGAGGATGGGTGAGGATTTAAATGATCTGGACTTCCAACAACTACGCAGTCTTGAGGAGGATATGGTTTCTGCCTCCGGGATCATACGTGAACGAAAGCTTCATGTAATCAAAACTCGGACAAGTACCAGTAAGAAAAGGGTCAAAAGCATGAAGCAGATGAACGAGAATCTGCTGCTTGAACTTGAAAAGTGTGTGATCCATTCACAATATCTGGTGCCCGAGGAAGGAGACCAGGAATCATCAGCAGTTACGGTGGCCACTGGTGTCTCTAACTTCCATGGATTGTGCCACCAGCAGCACCCTACCCATATGAATCTTCACCATAATGGAATGGGATTGAGATCTGACGATCTGCGCCTTGCTTGA 690 0.4507 MGRGKIEIKLIENATNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYTTPGLTTKNIIDQYQRTLGNIDLWSAQYERMLENMKKLKETNNKLRRQIRQRMGEDLNDLDFQQLRSLEEDMVSASGIIRERKLHVIKTRTSTSKKRVKSMKQMNENLLLELEKCVIHSQYLVPEEGDQESSAVTVATGVSNFHGLCHQQHPTHMNLHHNGMGLRSDDLRLA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3995g00005 229 Coils Coil 78 112 - -
Pral3995g00005 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Pral3995g00005 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Pral3995g00005 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral3995g00005 229 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Pral3995g00005 229 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3995g00005 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral3995g00005 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral3995g00005 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral3995g00005 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral3995g00005 229 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral3995g00005 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral3995g00005 229 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Pral3995g00005 229 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3995g00005 Pral-Chr3995 21221 34562 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3995g00005 1 211 MADS-box Gene Family AT3G54340 51.389 1.78e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral3995g00005 K-box 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3995g00005 K09264 - gmx:100784496 318.161